miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 36874 0.68 0.854964
Target:  5'- gGACG-GCgGGGCgccCCCGCAGAgacagccccGCCGGc -3'
miRNA:   3'- -CUGCgCGaCCUGa--GGGUGUUU---------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 118740 0.68 0.854964
Target:  5'- uACGUGCUGGGC-CCgGCG--GCCGu -3'
miRNA:   3'- cUGCGCGACCUGaGGgUGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 141848 0.68 0.858083
Target:  5'- cGACGCGagGGGCUCgcgCCGCGcccucuggugccggaGGGCCGGg -3'
miRNA:   3'- -CUGCGCgaCCUGAG---GGUGU---------------UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 104409 0.68 0.8627
Target:  5'- cGGCGUGCUGG---CCCGCGccgccGCCGGc -3'
miRNA:   3'- -CUGCGCGACCugaGGGUGUuu---UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 121770 0.68 0.8627
Target:  5'- --aGCGCUGcGAC-CCCGCGguggugcgcGAGCUGGc -3'
miRNA:   3'- cugCGCGAC-CUGaGGGUGU---------UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 102452 0.68 0.8627
Target:  5'- gGACGCGCUcgaguccggGGGCUCCUACGcgcAGCucuCGGc -3'
miRNA:   3'- -CUGCGCGA---------CCUGAGGGUGUu--UUG---GCC- -5'
29367 3' -54.7 NC_006151.1 + 136821 0.68 0.8627
Target:  5'- cGACGCGCcgcgcGGGCUCUgcgaCGCGGccGCCGGc -3'
miRNA:   3'- -CUGCGCGa----CCUGAGG----GUGUUu-UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 4616 0.68 0.870225
Target:  5'- gGGCGCG-UGGACccggcgCUgGCAGAACUGGu -3'
miRNA:   3'- -CUGCGCgACCUGa-----GGgUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 103718 0.68 0.870225
Target:  5'- -cCGgaGCUGGGCUUCCugGAGccGCUGGc -3'
miRNA:   3'- cuGCg-CGACCUGAGGGugUUU--UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 78670 0.68 0.877535
Target:  5'- gGGCGCggguGCUGGACgggCuCUACGccGGCCGGg -3'
miRNA:   3'- -CUGCG----CGACCUGa--G-GGUGUu-UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 7666 0.68 0.877535
Target:  5'- cGCGCGCUccgaGGGCgCCC-CA--GCCGGu -3'
miRNA:   3'- cUGCGCGA----CCUGaGGGuGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 51130 0.68 0.877535
Target:  5'- -uCGCGCaGGGCgUCCCggaGCAcgucGGGCCGGu -3'
miRNA:   3'- cuGCGCGaCCUG-AGGG---UGU----UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 116989 0.68 0.882519
Target:  5'- uGAgGCGCUGGugccgcagcaccacGCgcuccCCCGCGGGcCCGGg -3'
miRNA:   3'- -CUgCGCGACC--------------UGa----GGGUGUUUuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 104575 0.68 0.884622
Target:  5'- cGGCGCGC-GGACgUgCUGCA-GGCCGGc -3'
miRNA:   3'- -CUGCGCGaCCUG-AgGGUGUuUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 139200 0.68 0.884622
Target:  5'- cGGgGCGCUGGAgCUCCUggcgGCGAcgcuGCCGc -3'
miRNA:   3'- -CUgCGCGACCU-GAGGG----UGUUu---UGGCc -5'
29367 3' -54.7 NC_006151.1 + 13122 0.68 0.884622
Target:  5'- cACGCGC---GCUCCCGCGAcuucCCGGc -3'
miRNA:   3'- cUGCGCGaccUGAGGGUGUUuu--GGCC- -5'
29367 3' -54.7 NC_006151.1 + 28312 0.68 0.884622
Target:  5'- cGGCGCGUccccgGGGCgCCCGCcc--CCGGg -3'
miRNA:   3'- -CUGCGCGa----CCUGaGGGUGuuuuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 76822 0.68 0.884622
Target:  5'- gGGCGCGUaGuGGCggCCCGCGu--CCGGg -3'
miRNA:   3'- -CUGCGCGaC-CUGa-GGGUGUuuuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 39369 0.68 0.885319
Target:  5'- -uCGUGCUGGACaccaucgaggacuggCCCGCGGAcggcCCGGc -3'
miRNA:   3'- cuGCGCGACCUGa--------------GGGUGUUUu---GGCC- -5'
29367 3' -54.7 NC_006151.1 + 23897 0.68 0.89013
Target:  5'- cACGgGCUGGGCgucggucgcgggCCCgACGGGccGCCGGu -3'
miRNA:   3'- cUGCgCGACCUGa-----------GGG-UGUUU--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.