miRNA display CGI


Results 41 - 60 of 124 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 107576 0.66 0.94257
Target:  5'- -cCGCGgaGcuGACUCCCGCcgccAAGCUGGc -3'
miRNA:   3'- cuGCGCgaC--CUGAGGGUGu---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 3946 0.66 0.94257
Target:  5'- --gGCGC-GGGCUCC-GCGGGcCCGGg -3'
miRNA:   3'- cugCGCGaCCUGAGGgUGUUUuGGCC- -5'
29367 3' -54.7 NC_006151.1 + 35195 0.66 0.939771
Target:  5'- aGGCGCGCgGGAgacgcCUCCgCGCGcccauuggcccgggcGAGCCGa -3'
miRNA:   3'- -CUGCGCGaCCU-----GAGG-GUGU---------------UUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 127467 0.66 0.939771
Target:  5'- --aGCGCUGGGCggcgcggaacgagCCGCGGAccccgcGCCGGa -3'
miRNA:   3'- cugCGCGACCUGag-----------GGUGUUU------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 58477 0.66 0.937857
Target:  5'- cGACGaCGUcggcguccacgUGGAUgaugCCCGCGcgcGGGCCGGc -3'
miRNA:   3'- -CUGC-GCG-----------ACCUGa---GGGUGU---UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 28845 0.66 0.937857
Target:  5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3'
miRNA:   3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 19277 0.65 0.950036
Target:  5'- uGGCGCGCgGGGC-CCaccggggccagcggCGCGGgcGGCCGGu -3'
miRNA:   3'- -CUGCGCGaCCUGaGG--------------GUGUU--UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 118162 0.66 0.937857
Target:  5'- uGGCGcCGCUGGuGCgcggCCUgaccguCGAGGCCGGc -3'
miRNA:   3'- -CUGC-GCGACC-UGa---GGGu-----GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 100197 0.66 0.937857
Target:  5'- cGACcUGCUGGACUCgauggCCACG--GCCGcGg -3'
miRNA:   3'- -CUGcGCGACCUGAG-----GGUGUuuUGGC-C- -5'
29367 3' -54.7 NC_006151.1 + 140183 0.66 0.937857
Target:  5'- uGCGCacGCUGGAC-CCCAUcguGGCCa- -3'
miRNA:   3'- cUGCG--CGACCUGaGGGUGuu-UUGGcc -5'
29367 3' -54.7 NC_006151.1 + 136415 0.66 0.937857
Target:  5'- uACGCGCgGGGC-CCCGCGGcggcgcacGCCGc -3'
miRNA:   3'- cUGCGCGaCCUGaGGGUGUUu-------UGGCc -5'
29367 3' -54.7 NC_006151.1 + 22794 0.66 0.937857
Target:  5'- cACGUGCUGGGCcgucUCCC-CG--GCCGu -3'
miRNA:   3'- cUGCGCGACCUG----AGGGuGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 21089 0.66 0.937857
Target:  5'- cGGCGaGgaGGAgcCCCGCGggGAGCCGGg -3'
miRNA:   3'- -CUGCgCgaCCUgaGGGUGU--UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 96329 0.66 0.933409
Target:  5'- cGCGCGCguagagcgccggguaGGcCUCCCGcCAGAACCa- -3'
miRNA:   3'- cUGCGCGa--------------CCuGAGGGU-GUUUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 83360 0.66 0.932903
Target:  5'- cGGCGCGCgcgcGGGCgcgcaggCgCCGCAGGugcucguCCGGg -3'
miRNA:   3'- -CUGCGCGa---CCUGa------G-GGUGUUUu------GGCC- -5'
29367 3' -54.7 NC_006151.1 + 59358 0.66 0.932903
Target:  5'- cGCGCGCacgGGGCg-CCGCGcgGCCGu -3'
miRNA:   3'- cUGCGCGa--CCUGagGGUGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 136485 0.66 0.932903
Target:  5'- aGAUGgGCguccuccgGGACuacaucUCCCACG--ACCGGg -3'
miRNA:   3'- -CUGCgCGa-------CCUG------AGGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 65725 0.66 0.932903
Target:  5'- cGCGCgGCUGcGCgcggCCCA-GGAGCCGGg -3'
miRNA:   3'- cUGCG-CGACcUGa---GGGUgUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 54704 0.66 0.932903
Target:  5'- aGCGUGCUGGGCcagggCCUggACGAGgugGCCGa -3'
miRNA:   3'- cUGCGCGACCUGa----GGG--UGUUU---UGGCc -5'
29367 3' -54.7 NC_006151.1 + 137336 0.66 0.932903
Target:  5'- -uCGCGCUGcuCUUCCcCGAGGCCGa -3'
miRNA:   3'- cuGCGCGACcuGAGGGuGUUUUGGCc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.