miRNA display CGI


Results 41 - 60 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 60798 0.66 0.947045
Target:  5'- uGCaCGCUGGGCUCgCCGCGcAGCUc- -3'
miRNA:   3'- cUGcGCGACCUGAG-GGUGUuUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 3833 0.66 0.947045
Target:  5'- uGGCgGgGCUGGAgggCCCG--GAGCCGGg -3'
miRNA:   3'- -CUG-CgCGACCUga-GGGUguUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 62257 0.66 0.947045
Target:  5'- uACGUGCaGGuGCUCCC-CAc-GCCGGc -3'
miRNA:   3'- cUGCGCGaCC-UGAGGGuGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 64789 0.66 0.947045
Target:  5'- gGGCGCgaGCUGGccacGCcCUCGCGgAAGCCGGc -3'
miRNA:   3'- -CUGCG--CGACC----UGaGGGUGU-UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 61899 0.66 0.947045
Target:  5'- cGugGUGCUGcuGAUggCCCACAAgcAGgCGGg -3'
miRNA:   3'- -CugCGCGAC--CUGa-GGGUGUU--UUgGCC- -5'
29367 3' -54.7 NC_006151.1 + 28845 0.66 0.937857
Target:  5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3'
miRNA:   3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 131027 0.66 0.937857
Target:  5'- aGCGgGUgaaGGcCUCCCGCucgucGGGGCCGGa -3'
miRNA:   3'- cUGCgCGa--CCuGAGGGUG-----UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 137336 0.66 0.932903
Target:  5'- -uCGCGCUGcuCUUCCcCGAGGCCGa -3'
miRNA:   3'- cuGCGCGACcuGAGGGuGUUUUGGCc -5'
29367 3' -54.7 NC_006151.1 + 54704 0.66 0.932903
Target:  5'- aGCGUGCUGGGCcagggCCUggACGAGgugGCCGa -3'
miRNA:   3'- cUGCGCGACCUGa----GGG--UGUUU---UGGCc -5'
29367 3' -54.7 NC_006151.1 + 65725 0.66 0.932903
Target:  5'- cGCGCgGCUGcGCgcggCCCA-GGAGCCGGg -3'
miRNA:   3'- cUGCG-CGACcUGa---GGGUgUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 136485 0.66 0.932903
Target:  5'- aGAUGgGCguccuccgGGACuacaucUCCCACG--ACCGGg -3'
miRNA:   3'- -CUGCgCGa-------CCUG------AGGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 59358 0.66 0.932903
Target:  5'- cGCGCGCacgGGGCg-CCGCGcgGCCGu -3'
miRNA:   3'- cUGCGCGa--CCUGagGGUGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 83360 0.66 0.932903
Target:  5'- cGGCGCGCgcgcGGGCgcgcaggCgCCGCAGGugcucguCCGGg -3'
miRNA:   3'- -CUGCGCGa---CCUGa------G-GGUGUUUu------GGCC- -5'
29367 3' -54.7 NC_006151.1 + 96329 0.66 0.933409
Target:  5'- cGCGCGCguagagcgccggguaGGcCUCCCGcCAGAACCa- -3'
miRNA:   3'- cUGCGCGa--------------CCuGAGGGU-GUUUUGGcc -5'
29367 3' -54.7 NC_006151.1 + 21089 0.66 0.937857
Target:  5'- cGGCGaGgaGGAgcCCCGCGggGAGCCGGg -3'
miRNA:   3'- -CUGCgCgaCCUgaGGGUGU--UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 22794 0.66 0.937857
Target:  5'- cACGUGCUGGGCcgucUCCC-CG--GCCGu -3'
miRNA:   3'- cUGCGCGACCUG----AGGGuGUuuUGGCc -5'
29367 3' -54.7 NC_006151.1 + 136415 0.66 0.937857
Target:  5'- uACGCGCgGGGC-CCCGCGGcggcgcacGCCGc -3'
miRNA:   3'- cUGCGCGaCCUGaGGGUGUUu-------UGGCc -5'
29367 3' -54.7 NC_006151.1 + 140183 0.66 0.937857
Target:  5'- uGCGCacGCUGGAC-CCCAUcguGGCCa- -3'
miRNA:   3'- cUGCG--CGACCUGaGGGUGuu-UUGGcc -5'
29367 3' -54.7 NC_006151.1 + 100197 0.66 0.937857
Target:  5'- cGACcUGCUGGACUCgauggCCACG--GCCGcGg -3'
miRNA:   3'- -CUGcGCGACCUGAG-----GGUGUuuUGGC-C- -5'
29367 3' -54.7 NC_006151.1 + 118162 0.66 0.937857
Target:  5'- uGGCGcCGCUGGuGCgcggCCUgaccguCGAGGCCGGc -3'
miRNA:   3'- -CUGC-GCGACC-UGa---GGGu-----GUUUUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.