Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 3' | -54.7 | NC_006151.1 | + | 107576 | 0.66 | 0.94257 |
Target: 5'- -cCGCGgaGcuGACUCCCGCcgccAAGCUGGc -3' miRNA: 3'- cuGCGCgaC--CUGAGGGUGu---UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 3946 | 0.66 | 0.94257 |
Target: 5'- --gGCGC-GGGCUCC-GCGGGcCCGGg -3' miRNA: 3'- cugCGCGaCCUGAGGgUGUUUuGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 35195 | 0.66 | 0.939771 |
Target: 5'- aGGCGCGCgGGAgacgcCUCCgCGCGcccauuggcccgggcGAGCCGa -3' miRNA: 3'- -CUGCGCGaCCU-----GAGG-GUGU---------------UUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 127467 | 0.66 | 0.939771 |
Target: 5'- --aGCGCUGGGCggcgcggaacgagCCGCGGAccccgcGCCGGa -3' miRNA: 3'- cugCGCGACCUGag-----------GGUGUUU------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 58477 | 0.66 | 0.937857 |
Target: 5'- cGACGaCGUcggcguccacgUGGAUgaugCCCGCGcgcGGGCCGGc -3' miRNA: 3'- -CUGC-GCG-----------ACCUGa---GGGUGU---UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 28845 | 0.66 | 0.937857 |
Target: 5'- gGACGCGggcccGGCUCCCcCAuuGGCCGGc -3' miRNA: 3'- -CUGCGCgac--CUGAGGGuGUu-UUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 19277 | 0.65 | 0.950036 |
Target: 5'- uGGCGCGCgGGGC-CCaccggggccagcggCGCGGgcGGCCGGu -3' miRNA: 3'- -CUGCGCGaCCUGaGG--------------GUGUU--UUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 118162 | 0.66 | 0.937857 |
Target: 5'- uGGCGcCGCUGGuGCgcggCCUgaccguCGAGGCCGGc -3' miRNA: 3'- -CUGC-GCGACC-UGa---GGGu-----GUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 100197 | 0.66 | 0.937857 |
Target: 5'- cGACcUGCUGGACUCgauggCCACG--GCCGcGg -3' miRNA: 3'- -CUGcGCGACCUGAG-----GGUGUuuUGGC-C- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 140183 | 0.66 | 0.937857 |
Target: 5'- uGCGCacGCUGGAC-CCCAUcguGGCCa- -3' miRNA: 3'- cUGCG--CGACCUGaGGGUGuu-UUGGcc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 136415 | 0.66 | 0.937857 |
Target: 5'- uACGCGCgGGGC-CCCGCGGcggcgcacGCCGc -3' miRNA: 3'- cUGCGCGaCCUGaGGGUGUUu-------UGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 22794 | 0.66 | 0.937857 |
Target: 5'- cACGUGCUGGGCcgucUCCC-CG--GCCGu -3' miRNA: 3'- cUGCGCGACCUG----AGGGuGUuuUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 21089 | 0.66 | 0.937857 |
Target: 5'- cGGCGaGgaGGAgcCCCGCGggGAGCCGGg -3' miRNA: 3'- -CUGCgCgaCCUgaGGGUGU--UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 96329 | 0.66 | 0.933409 |
Target: 5'- cGCGCGCguagagcgccggguaGGcCUCCCGcCAGAACCa- -3' miRNA: 3'- cUGCGCGa--------------CCuGAGGGU-GUUUUGGcc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 83360 | 0.66 | 0.932903 |
Target: 5'- cGGCGCGCgcgcGGGCgcgcaggCgCCGCAGGugcucguCCGGg -3' miRNA: 3'- -CUGCGCGa---CCUGa------G-GGUGUUUu------GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 59358 | 0.66 | 0.932903 |
Target: 5'- cGCGCGCacgGGGCg-CCGCGcgGCCGu -3' miRNA: 3'- cUGCGCGa--CCUGagGGUGUuuUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 136485 | 0.66 | 0.932903 |
Target: 5'- aGAUGgGCguccuccgGGACuacaucUCCCACG--ACCGGg -3' miRNA: 3'- -CUGCgCGa-------CCUG------AGGGUGUuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 65725 | 0.66 | 0.932903 |
Target: 5'- cGCGCgGCUGcGCgcggCCCA-GGAGCCGGg -3' miRNA: 3'- cUGCG-CGACcUGa---GGGUgUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 54704 | 0.66 | 0.932903 |
Target: 5'- aGCGUGCUGGGCcagggCCUggACGAGgugGCCGa -3' miRNA: 3'- cUGCGCGACCUGa----GGG--UGUUU---UGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 137336 | 0.66 | 0.932903 |
Target: 5'- -uCGCGCUGcuCUUCCcCGAGGCCGa -3' miRNA: 3'- cuGCGCGACcuGAGGGuGUUUUGGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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