miRNA display CGI


Results 41 - 60 of 124 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 3' -54.7 NC_006151.1 + 64713 0.67 0.904511
Target:  5'- aGCGcCGCcaucCUCgCCGCAGAACCGGg -3'
miRNA:   3'- cUGC-GCGaccuGAG-GGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 8329 0.67 0.904511
Target:  5'- gGGCGCGC-GGGCcucgaucgcgCCCGCcGGACgCGGa -3'
miRNA:   3'- -CUGCGCGaCCUGa---------GGGUGuUUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 134109 0.67 0.904511
Target:  5'- gGGCGgcUGCUGGugUgCCGgagucCGGGGCCGGa -3'
miRNA:   3'- -CUGC--GCGACCugAgGGU-----GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 121059 0.67 0.903882
Target:  5'- -cCGCGCgUGGGCUucacgugCUCGCAGAcgggcggcggcGCCGGg -3'
miRNA:   3'- cuGCGCG-ACCUGA-------GGGUGUUU-----------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 104824 0.67 0.898114
Target:  5'- cGGCGCGCgacGGcCUCgCCGCGgcgGAGgCGGa -3'
miRNA:   3'- -CUGCGCGa--CCuGAG-GGUGU---UUUgGCC- -5'
29367 3' -54.7 NC_006151.1 + 102856 0.67 0.898114
Target:  5'- cGGCGCGCaGcGCUUCCGCGugGCCa- -3'
miRNA:   3'- -CUGCGCGaCcUGAGGGUGUuuUGGcc -5'
29367 3' -54.7 NC_006151.1 + 78627 0.67 0.898114
Target:  5'- aACGCGCcGGACgCCgACGcgugcGAGCUGGu -3'
miRNA:   3'- cUGCGCGaCCUGaGGgUGU-----UUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 2587 0.67 0.910065
Target:  5'- cACGCGCUGGcgguaggcgcgcgGCggcaGCGGGACCGGg -3'
miRNA:   3'- cUGCGCGACC-------------UGagggUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 45917 0.67 0.91067
Target:  5'- --aGCGCUGGACcCUgACGAGcACCGc -3'
miRNA:   3'- cugCGCGACCUGaGGgUGUUU-UGGCc -5'
29367 3' -54.7 NC_006151.1 + 86708 0.67 0.921713
Target:  5'- cGAC-CGCUGGgaGCUggucgcggcgcgcCgCCGCGAGGCCGGc -3'
miRNA:   3'- -CUGcGCGACC--UGA-------------G-GGUGUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 16980 0.67 0.921713
Target:  5'- cGugGCGCcaggagcgguugUGGAC-CCgCGCGAAcauggcgcgggugGCCGGg -3'
miRNA:   3'- -CugCGCG------------ACCUGaGG-GUGUUU-------------UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 50868 0.67 0.916591
Target:  5'- -cCGCGCccccGGAC-CCCGuccCGGGGCCGGc -3'
miRNA:   3'- cuGCGCGa---CCUGaGGGU---GUUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 14221 0.67 0.916591
Target:  5'- cGACGauCGCgGGAC-CCgACGGuACCGGa -3'
miRNA:   3'- -CUGC--GCGaCCUGaGGgUGUUuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 24056 0.67 0.91601
Target:  5'- aGAUGCGCaaaggugUGuGugUCCUACcgcucGGAGCCGGc -3'
miRNA:   3'- -CUGCGCG-------AC-CugAGGGUG-----UUUUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 90199 0.67 0.91067
Target:  5'- aGCGCGCa-GACggCCCACAGcaggacGCCGGc -3'
miRNA:   3'- cUGCGCGacCUGa-GGGUGUUu-----UGGCC- -5'
29367 3' -54.7 NC_006151.1 + 52371 0.67 0.91067
Target:  5'- cGGCGCGCccccGGGg-CCCGCGGGGgCGGc -3'
miRNA:   3'- -CUGCGCGa---CCUgaGGGUGUUUUgGCC- -5'
29367 3' -54.7 NC_006151.1 + 129261 0.67 0.91067
Target:  5'- cGGCGCGa-GGcaucCUUCCACGAAGCgCGGc -3'
miRNA:   3'- -CUGCGCgaCCu---GAGGGUGUUUUG-GCC- -5'
29367 3' -54.7 NC_006151.1 + 124490 0.67 0.91067
Target:  5'- aACGCGCUcGGCaCCCGCG--GCUGGc -3'
miRNA:   3'- cUGCGCGAcCUGaGGGUGUuuUGGCC- -5'
29367 3' -54.7 NC_006151.1 + 122518 0.67 0.91067
Target:  5'- gGACGCGCuccUGGACgCgCACGAcguguuCCGGc -3'
miRNA:   3'- -CUGCGCG---ACCUGaGgGUGUUuu----GGCC- -5'
29367 3' -54.7 NC_006151.1 + 88126 0.67 0.91067
Target:  5'- aGCGgGCgGGcGCUCCgCACGuugagcAGGCCGGg -3'
miRNA:   3'- cUGCgCGaCC-UGAGG-GUGU------UUUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.