Results 41 - 60 of 124 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29367 | 3' | -54.7 | NC_006151.1 | + | 89102 | 0.67 | 0.904511 |
Target: 5'- -cCGCGg-GGGCUUCCugcGCGAGACCGa -3' miRNA: 3'- cuGCGCgaCCUGAGGG---UGUUUUGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 64713 | 0.67 | 0.904511 |
Target: 5'- aGCGcCGCcaucCUCgCCGCAGAACCGGg -3' miRNA: 3'- cUGC-GCGaccuGAG-GGUGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 8329 | 0.67 | 0.904511 |
Target: 5'- gGGCGCGC-GGGCcucgaucgcgCCCGCcGGACgCGGa -3' miRNA: 3'- -CUGCGCGaCCUGa---------GGGUGuUUUG-GCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 14221 | 0.67 | 0.916591 |
Target: 5'- cGACGauCGCgGGAC-CCgACGGuACCGGa -3' miRNA: 3'- -CUGC--GCGaCCUGaGGgUGUUuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 134109 | 0.67 | 0.904511 |
Target: 5'- gGGCGgcUGCUGGugUgCCGgagucCGGGGCCGGa -3' miRNA: 3'- -CUGC--GCGACCugAgGGU-----GUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 121059 | 0.67 | 0.903882 |
Target: 5'- -cCGCGCgUGGGCUucacgugCUCGCAGAcgggcggcggcGCCGGg -3' miRNA: 3'- cuGCGCG-ACCUGA-------GGGUGUUU-----------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 104824 | 0.67 | 0.898114 |
Target: 5'- cGGCGCGCgacGGcCUCgCCGCGgcgGAGgCGGa -3' miRNA: 3'- -CUGCGCGa--CCuGAG-GGUGU---UUUgGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 102856 | 0.67 | 0.898114 |
Target: 5'- cGGCGCGCaGcGCUUCCGCGugGCCa- -3' miRNA: 3'- -CUGCGCGaCcUGAGGGUGUuuUGGcc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 45917 | 0.67 | 0.91067 |
Target: 5'- --aGCGCUGGACcCUgACGAGcACCGc -3' miRNA: 3'- cugCGCGACCUGaGGgUGUUU-UGGCc -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 88126 | 0.67 | 0.91067 |
Target: 5'- aGCGgGCgGGcGCUCCgCACGuugagcAGGCCGGg -3' miRNA: 3'- cUGCgCGaCC-UGAGG-GUGU------UUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 122518 | 0.67 | 0.91067 |
Target: 5'- gGACGCGCuccUGGACgCgCACGAcguguuCCGGc -3' miRNA: 3'- -CUGCGCG---ACCUGaGgGUGUUuu----GGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 124490 | 0.67 | 0.91067 |
Target: 5'- aACGCGCUcGGCaCCCGCG--GCUGGc -3' miRNA: 3'- cUGCGCGAcCUGaGGGUGUuuUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 129261 | 0.67 | 0.91067 |
Target: 5'- cGGCGCGa-GGcaucCUUCCACGAAGCgCGGc -3' miRNA: 3'- -CUGCGCgaCCu---GAGGGUGUUUUG-GCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 52371 | 0.67 | 0.91067 |
Target: 5'- cGGCGCGCccccGGGg-CCCGCGGGGgCGGc -3' miRNA: 3'- -CUGCGCGa---CCUgaGGGUGUUUUgGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 90199 | 0.67 | 0.91067 |
Target: 5'- aGCGCGCa-GACggCCCACAGcaggacGCCGGc -3' miRNA: 3'- cUGCGCGacCUGa-GGGUGUUu-----UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 24056 | 0.67 | 0.91601 |
Target: 5'- aGAUGCGCaaaggugUGuGugUCCUACcgcucGGAGCCGGc -3' miRNA: 3'- -CUGCGCG-------AC-CugAGGGUG-----UUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 50868 | 0.67 | 0.916591 |
Target: 5'- -cCGCGCccccGGAC-CCCGuccCGGGGCCGGc -3' miRNA: 3'- cuGCGCGa---CCUGaGGGU---GUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 16980 | 0.67 | 0.921713 |
Target: 5'- cGugGCGCcaggagcgguugUGGAC-CCgCGCGAAcauggcgcgggugGCCGGg -3' miRNA: 3'- -CugCGCG------------ACCUGaGG-GUGUUU-------------UGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 86708 | 0.67 | 0.921713 |
Target: 5'- cGAC-CGCUGGgaGCUggucgcggcgcgcCgCCGCGAGGCCGGc -3' miRNA: 3'- -CUGcGCGACC--UGA-------------G-GGUGUUUUGGCC- -5' |
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29367 | 3' | -54.7 | NC_006151.1 | + | 87324 | 0.67 | 0.92227 |
Target: 5'- -cCGUGCcGGcGCUCCCGgGccuGCCGGg -3' miRNA: 3'- cuGCGCGaCC-UGAGGGUgUuu-UGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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