miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29367 5' -61.1 NC_006151.1 + 104250 0.66 0.641019
Target:  5'- cCCgCACCUGCCcgagaacGCC-GGCGcgGCGGCg -3'
miRNA:   3'- cGG-GUGGACGG-------CGGaCUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 112833 0.66 0.632007
Target:  5'- cGCCacgCGCgUGCucaCGCUcgugGACGUGCAGCg -3'
miRNA:   3'- -CGG---GUGgACG---GCGGa---CUGCACGUCGa -5'
29367 5' -61.1 NC_006151.1 + 86088 0.66 0.632007
Target:  5'- cGCgCCGCC-GCCGCCauggggcccgUGuACGUGUccGGCUa -3'
miRNA:   3'- -CG-GGUGGaCGGCGG----------AC-UGCACG--UCGA- -5'
29367 5' -61.1 NC_006151.1 + 86053 0.66 0.632007
Target:  5'- aGUUCGCC-GCCGCCUGAgCccGCAGUc -3'
miRNA:   3'- -CGGGUGGaCGGCGGACU-GcaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 133472 0.66 0.631006
Target:  5'- gGCCCGCgagGCgGCCgcgGGCGUcaccuugGCGGCg -3'
miRNA:   3'- -CGGGUGga-CGgCGGa--CUGCA-------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 72827 0.66 0.629003
Target:  5'- cGCCCACggGCCGCUUGAacugguacuccCGUugcucgucggcgagGCGGCg -3'
miRNA:   3'- -CGGGUGgaCGGCGGACU-----------GCA--------------CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 136953 0.66 0.626
Target:  5'- cGCCguCCUgcGCCGCCUGcuggagcuggccgccGCGccggGCGGCg -3'
miRNA:   3'- -CGGguGGA--CGGCGGAC---------------UGCa---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 61987 0.66 0.621995
Target:  5'- uGCCaCGCCUGCaaggGCacgggUGACGUGCGcGCc -3'
miRNA:   3'- -CGG-GUGGACGg---CGg----ACUGCACGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 120900 0.66 0.621995
Target:  5'- cGCCCGCUgguggUGCUggGCCUgGGCGU-CAGCa -3'
miRNA:   3'- -CGGGUGG-----ACGG--CGGA-CUGCAcGUCGa -5'
29367 5' -61.1 NC_006151.1 + 133253 0.66 0.621995
Target:  5'- gGCCUcgcacgGCCUGUCGCUgaaGGCGagccgGCGGCg -3'
miRNA:   3'- -CGGG------UGGACGGCGGa--CUGCa----CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 50675 0.66 0.621995
Target:  5'- gGCCgCACCcccgcGCCGCC--GCG-GCAGCg -3'
miRNA:   3'- -CGG-GUGGa----CGGCGGacUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 67991 0.66 0.621995
Target:  5'- gGCCCGCCggcGCCGCggccacgGGCucgGCGGCg -3'
miRNA:   3'- -CGGGUGGa--CGGCGga-----CUGca-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 104879 0.66 0.621995
Target:  5'- cGCCacgCGCCUGCUGCgCgagguggugGACGcgGCGGCg -3'
miRNA:   3'- -CGG---GUGGACGGCG-Ga--------CUGCa-CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 60090 0.67 0.61199
Target:  5'- cGCgCCGCCgcgaaCGCCgGGCG-GCAGCg -3'
miRNA:   3'- -CG-GGUGGacg--GCGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 115745 0.67 0.61199
Target:  5'- -aCCACCUugaugGCCGCCUGcuGCuGUccaGCAGCa -3'
miRNA:   3'- cgGGUGGA-----CGGCGGAC--UG-CA---CGUCGa -5'
29367 5' -61.1 NC_006151.1 + 65026 0.67 0.601999
Target:  5'- gGCCCACCUcguacgGCaggggGCCcGGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGA------CGg----CGGaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 105563 0.67 0.601999
Target:  5'- cGCCCugCgcgcgcuggcgGCCGCCUucGACGcGCGcGCg -3'
miRNA:   3'- -CGGGugGa----------CGGCGGA--CUGCaCGU-CGa -5'
29367 5' -61.1 NC_006151.1 + 90712 0.67 0.601999
Target:  5'- cGCCCGCC--CCGCa-GGCG-GCGGCg -3'
miRNA:   3'- -CGGGUGGacGGCGgaCUGCaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 52745 0.67 0.59203
Target:  5'- cGCCCugCUGCgcgcgCGCCUcGCaGcGCAGCg -3'
miRNA:   3'- -CGGGugGACG-----GCGGAcUG-CaCGUCGa -5'
29367 5' -61.1 NC_006151.1 + 101544 0.67 0.59203
Target:  5'- gGCgCGCCUG-CGCCcggcgGACGUGUAcGCg -3'
miRNA:   3'- -CGgGUGGACgGCGGa----CUGCACGU-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.