miRNA display CGI


Results 41 - 60 of 365 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 3' -65 NC_006151.1 + 5643 0.74 0.146177
Target:  5'- gCGCCgaGACcGGCCCgGCGGCGGgGGa -3'
miRNA:   3'- -GCGGg-CUGuCCGGGaCGCCGUCgCCg -5'
29369 3' -65 NC_006151.1 + 64491 0.74 0.146177
Target:  5'- aCGCCCG-CGGGCgCggGCGGCGgGCGcGCg -3'
miRNA:   3'- -GCGGGCuGUCCGgGa-CGCCGU-CGC-CG- -5'
29369 3' -65 NC_006151.1 + 60712 0.74 0.149771
Target:  5'- cCGCCgCGACcucGGCCCcgaggUGCcggagcacgaGGCAGCGGCg -3'
miRNA:   3'- -GCGG-GCUGu--CCGGG-----ACG----------CCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 37733 0.74 0.153075
Target:  5'- cCGCCCagGACccgcucuGGGCCCUGCcGCAcGCGGUg -3'
miRNA:   3'- -GCGGG--CUG-------UCCGGGACGcCGU-CGCCG- -5'
29369 3' -65 NC_006151.1 + 122437 0.74 0.153446
Target:  5'- gGCCCGGgAGGCggaggcggcguCCacgGCGGCGGCGGg -3'
miRNA:   3'- gCGGGCUgUCCG-----------GGa--CGCCGUCGCCg -5'
29369 3' -65 NC_006151.1 + 129802 0.74 0.153446
Target:  5'- gGCCCGcAUgAGGCCCgugagcgcggaGCGcGCGGCGGCg -3'
miRNA:   3'- gCGGGC-UG-UCCGGGa----------CGC-CGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 3952 0.74 0.153446
Target:  5'- gGCUCcGCGGGCCCgggccgcGCGGCGGCcucGGCg -3'
miRNA:   3'- gCGGGcUGUCCGGGa------CGCCGUCG---CCG- -5'
29369 3' -65 NC_006151.1 + 123887 0.74 0.157203
Target:  5'- gCGCUCGcCGcGGCCCcgccgUGCGGC-GCGGCg -3'
miRNA:   3'- -GCGGGCuGU-CCGGG-----ACGCCGuCGCCG- -5'
29369 3' -65 NC_006151.1 + 78712 0.74 0.161042
Target:  5'- uCGCCgCGACGGcGCCCgugggGCGcGCGcuGCGGCc -3'
miRNA:   3'- -GCGG-GCUGUC-CGGGa----CGC-CGU--CGCCG- -5'
29369 3' -65 NC_006151.1 + 106782 0.74 0.161042
Target:  5'- gCGCCUGGaccuGGCC--GCGGCGGCGGUg -3'
miRNA:   3'- -GCGGGCUgu--CCGGgaCGCCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 95180 0.74 0.164966
Target:  5'- aCGgUCGuguGCAGGCCCUGCaGGCcgaugcccagcgAGCGGCu -3'
miRNA:   3'- -GCgGGC---UGUCCGGGACG-CCG------------UCGCCG- -5'
29369 3' -65 NC_006151.1 + 135101 0.74 0.164966
Target:  5'- gGCCgGGCGGGCg--GCGGUAGCGcGCg -3'
miRNA:   3'- gCGGgCUGUCCGggaCGCCGUCGC-CG- -5'
29369 3' -65 NC_006151.1 + 125184 0.74 0.167763
Target:  5'- gCGCCuCGGCcucgccggcgucguGGGCCCcGCGGCccccGCGGCc -3'
miRNA:   3'- -GCGG-GCUG--------------UCCGGGaCGCCGu---CGCCG- -5'
29369 3' -65 NC_006151.1 + 134770 0.74 0.16857
Target:  5'- gGCCCGcggcuucggcuccACGGGCCUgugagGCcGCGGCGGCc -3'
miRNA:   3'- gCGGGC-------------UGUCCGGGa----CGcCGUCGCCG- -5'
29369 3' -65 NC_006151.1 + 2279 0.74 0.168975
Target:  5'- aCGgCCGGCGGggcGCCCgcgGCGGCGaCGGCg -3'
miRNA:   3'- -GCgGGCUGUC---CGGGa--CGCCGUcGCCG- -5'
29369 3' -65 NC_006151.1 + 96864 0.74 0.168975
Target:  5'- gCGCCCGcCGGGCgCggcGCGcGCGGgGGCa -3'
miRNA:   3'- -GCGGGCuGUCCGgGa--CGC-CGUCgCCG- -5'
29369 3' -65 NC_006151.1 + 38128 0.74 0.168975
Target:  5'- gGgCCGGCccGGCCgaGCGGCGGCaGGCc -3'
miRNA:   3'- gCgGGCUGu-CCGGgaCGCCGUCG-CCG- -5'
29369 3' -65 NC_006151.1 + 82626 0.73 0.173071
Target:  5'- gCGCCgCGgugggcGCGGGacccCCCUGCGGCgagGGCGGCc -3'
miRNA:   3'- -GCGG-GC------UGUCC----GGGACGCCG---UCGCCG- -5'
29369 3' -65 NC_006151.1 + 37177 0.73 0.173071
Target:  5'- gCGCCCGcCGcGGCCCcGCGGCccuCGGCc -3'
miRNA:   3'- -GCGGGCuGU-CCGGGaCGCCGuc-GCCG- -5'
29369 3' -65 NC_006151.1 + 82137 0.73 0.173071
Target:  5'- gGCCCGcggGCGGGCCCgGCGGCuccaGGUc -3'
miRNA:   3'- gCGGGC---UGUCCGGGaCGCCGucg-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.