miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29369 5' -58.1 NC_006151.1 + 66785 0.75 0.269364
Target:  5'- gGACGGCGGCGGCGGCGgCGG-GGCc -3'
miRNA:   3'- gUUGUCGUCGUCGUCGCgGUCgUCGu -5'
29369 5' -58.1 NC_006151.1 + 84138 0.75 0.269364
Target:  5'- gGGCAGCGGCacgaggGGCuGUGCCAGCuGCGc -3'
miRNA:   3'- gUUGUCGUCG------UCGuCGCGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 83053 0.75 0.282623
Target:  5'- -cGCAGCGGCAGCAGCuugGCCAcgAGCGc -3'
miRNA:   3'- guUGUCGUCGUCGUCG---CGGUcgUCGU- -5'
29369 5' -58.1 NC_006151.1 + 133963 0.74 0.289444
Target:  5'- gCAGCAGCGGCAGCGGC-CCcuCGGUg -3'
miRNA:   3'- -GUUGUCGUCGUCGUCGcGGucGUCGu -5'
29369 5' -58.1 NC_006151.1 + 72745 0.74 0.295693
Target:  5'- -cGCAGCAGCGccgagucGCuGGCGCaCAGCGGCGg -3'
miRNA:   3'- guUGUCGUCGU-------CG-UCGCG-GUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 104597 0.74 0.303472
Target:  5'- cCGGCGGCAGCcGCGGCGCCGagaucuGCcGCGc -3'
miRNA:   3'- -GUUGUCGUCGuCGUCGCGGU------CGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 75119 0.74 0.303472
Target:  5'- --cCAGCAGCuGGuCGGCgGCCGGCGGCGc -3'
miRNA:   3'- guuGUCGUCG-UC-GUCG-CGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 71774 0.74 0.31068
Target:  5'- -uGCGGCAGCGGCGGCGggggcugccgcaCCAGCuGGCc -3'
miRNA:   3'- guUGUCGUCGUCGUCGC------------GGUCG-UCGu -5'
29369 5' -58.1 NC_006151.1 + 84685 0.74 0.31068
Target:  5'- gGACgAGCAGCuGCGGcCGCUggAGCGGCAg -3'
miRNA:   3'- gUUG-UCGUCGuCGUC-GCGG--UCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 20743 0.74 0.318017
Target:  5'- gAACAGCAGcCGGC-GCGCCuccaccGCGGCGg -3'
miRNA:   3'- gUUGUCGUC-GUCGuCGCGGu-----CGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 31764 0.74 0.318017
Target:  5'- -uGCGGCGGCgGGCGcGCGCCGgGCGGCu -3'
miRNA:   3'- guUGUCGUCG-UCGU-CGCGGU-CGUCGu -5'
29369 5' -58.1 NC_006151.1 + 121081 0.74 0.325484
Target:  5'- -cGCAGacgGGCGGCGGCGCCGGgCuGCAc -3'
miRNA:   3'- guUGUCg--UCGUCGUCGCGGUC-GuCGU- -5'
29369 5' -58.1 NC_006151.1 + 129945 0.74 0.325484
Target:  5'- cCAGCGGCAcCAGCGaCGCCGGCAcGCGc -3'
miRNA:   3'- -GUUGUCGUcGUCGUcGCGGUCGU-CGU- -5'
29369 5' -58.1 NC_006151.1 + 48730 0.73 0.33308
Target:  5'- gAAgGGCAcGCccGCGGCGUCGGCGGCAa -3'
miRNA:   3'- gUUgUCGU-CGu-CGUCGCGGUCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 74512 0.73 0.33308
Target:  5'- gAGCGGgGGCAGCAGCguggcguccGCCAGC-GCGu -3'
miRNA:   3'- gUUGUCgUCGUCGUCG---------CGGUCGuCGU- -5'
29369 5' -58.1 NC_006151.1 + 71984 0.73 0.33308
Target:  5'- gCGGgGGCAGCuGGUAGCGCCGGCcguuGCu -3'
miRNA:   3'- -GUUgUCGUCG-UCGUCGCGGUCGu---CGu -5'
29369 5' -58.1 NC_006151.1 + 3248 0.73 0.340806
Target:  5'- -cGCGGCGGCGGagcggGGCGCC-GCGGCGc -3'
miRNA:   3'- guUGUCGUCGUCg----UCGCGGuCGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 3085 0.73 0.340806
Target:  5'- gCGAaGGCGGCgAGCAGCGCCGagaggccgccGCGGCGc -3'
miRNA:   3'- -GUUgUCGUCG-UCGUCGCGGU----------CGUCGU- -5'
29369 5' -58.1 NC_006151.1 + 58321 0.73 0.340806
Target:  5'- --uCAGCGGCGGC-GCGCCGGCcuccGCGu -3'
miRNA:   3'- guuGUCGUCGUCGuCGCGGUCGu---CGU- -5'
29369 5' -58.1 NC_006151.1 + 67887 0.73 0.340806
Target:  5'- --cCAGCccgcggGGCA-CAGCGCCAGCAGCc -3'
miRNA:   3'- guuGUCG------UCGUcGUCGCGGUCGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.