miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 37975 0.66 0.560006
Target:  5'- -aCGCCUGCGuccuggccUGCCGCGGCguccucgagcgCCUGCUg -3'
miRNA:   3'- cgGUGGACGU--------GUGGCGCCG-----------GGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 31022 0.66 0.560006
Target:  5'- cGCCGCCgcgGC-CcUCGCGGCCCgGg-- -3'
miRNA:   3'- -CGGUGGa--CGuGuGGCGCCGGGgCgag -5'
29370 3' -63.7 NC_006151.1 + 104595 0.66 0.560006
Target:  5'- gGCCGgCgGCA-GCCGCGGCgCCGagaUCu -3'
miRNA:   3'- -CGGUgGaCGUgUGGCGCCGgGGCg--AG- -5'
29370 3' -63.7 NC_006151.1 + 84518 0.66 0.560006
Target:  5'- cGCCACUU---CAUCGCGcCCCCGUUCc -3'
miRNA:   3'- -CGGUGGAcguGUGGCGCcGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 57528 0.66 0.560006
Target:  5'- gGCCGCCUccgGCGCgGCCGCGGgCacguCGC-Cg -3'
miRNA:   3'- -CGGUGGA---CGUG-UGGCGCCgGg---GCGaG- -5'
29370 3' -63.7 NC_006151.1 + 59243 0.66 0.560006
Target:  5'- uGCgGCCgacgcGCACGCCGaaGGCCUC-CUCc -3'
miRNA:   3'- -CGgUGGa----CGUGUGGCg-CCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 72356 0.66 0.560006
Target:  5'- cGCCGCCgcaGgGCAgCGCGaCCUCGCg- -3'
miRNA:   3'- -CGGUGGa--CgUGUgGCGCcGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 52162 0.66 0.557118
Target:  5'- uCCACgUGCgucucgaagggcgcGCGCgcgaaCGCGGCCCCgaagaGCUCg -3'
miRNA:   3'- cGGUGgACG--------------UGUG-----GCGCCGGGG-----CGAG- -5'
29370 3' -63.7 NC_006151.1 + 5307 0.66 0.550397
Target:  5'- uGCCGCugcugcuggagCUGCugaaGCCGCGGCCgCgGCg- -3'
miRNA:   3'- -CGGUG-----------GACGug--UGGCGCCGG-GgCGag -5'
29370 3' -63.7 NC_006151.1 + 73100 0.66 0.550397
Target:  5'- cUCGCCgUGCACcucGCCgGCGGCgcgCCCGCg- -3'
miRNA:   3'- cGGUGG-ACGUG---UGG-CGCCG---GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 2182 0.66 0.550397
Target:  5'- gGCC-CCgGCGC-CCGaGGcCCCCGCg- -3'
miRNA:   3'- -CGGuGGaCGUGuGGCgCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 44667 0.66 0.550397
Target:  5'- aGCCcgACacaUGCGCACgGCGGCCggCgGCUg -3'
miRNA:   3'- -CGG--UGg--ACGUGUGgCGCCGG--GgCGAg -5'
29370 3' -63.7 NC_006151.1 + 98667 0.66 0.550397
Target:  5'- uCCGCCgacgacgucCugGCCGC-GCCCCGCgUCg -3'
miRNA:   3'- cGGUGGac-------GugUGGCGcCGGGGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 81377 0.66 0.550397
Target:  5'- cGCCAgCgcgaGcCGCGCCGCGGCgCCCa--- -3'
miRNA:   3'- -CGGUgGa---C-GUGUGGCGCCG-GGGcgag -5'
29370 3' -63.7 NC_006151.1 + 105257 0.66 0.549439
Target:  5'- cGCCugggacgagGCCUgggaggacuuuggGCGCGCgCGCGGCCgCGC-Cg -3'
miRNA:   3'- -CGG---------UGGA-------------CGUGUG-GCGCCGGgGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 48715 0.66 0.546567
Target:  5'- cGCCGCCcggcccgcgaaggGCACGcCCGCGGCgUCgGCg- -3'
miRNA:   3'- -CGGUGGa------------CGUGU-GGCGCCG-GGgCGag -5'
29370 3' -63.7 NC_006151.1 + 104083 0.66 0.540839
Target:  5'- cGCCgcGCCgagcaGCACGCCuucgacGCGGCCgaGUUCg -3'
miRNA:   3'- -CGG--UGGa----CGUGUGG------CGCCGGggCGAG- -5'
29370 3' -63.7 NC_006151.1 + 38070 0.66 0.540839
Target:  5'- cCCGCCUGCcucgaggaggugACgGCCGCGcuGCUCgCGCUCc -3'
miRNA:   3'- cGGUGGACG------------UG-UGGCGC--CGGG-GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 123916 0.66 0.540839
Target:  5'- gGCgGCCgugacGCGgGCCGCcucGGCCUCGC-Cg -3'
miRNA:   3'- -CGgUGGa----CGUgUGGCG---CCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 56627 0.66 0.540839
Target:  5'- cGCC-CCUGCGCacgcccgagaugGCCGaGGCCguguaCCGCUg -3'
miRNA:   3'- -CGGuGGACGUG------------UGGCgCCGG-----GGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.