miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 117544 0.66 0.540839
Target:  5'- cCCACgCgGCgacGCGCCGCGGCCagaaggGCUCc -3'
miRNA:   3'- cGGUG-GaCG---UGUGGCGCCGGgg----CGAG- -5'
29370 3' -63.7 NC_006151.1 + 15349 0.66 0.540839
Target:  5'- cCCGCC-GguCAUCGaGGgCCCGCUCu -3'
miRNA:   3'- cGGUGGaCguGUGGCgCCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 52366 0.66 0.540839
Target:  5'- uCCGCCgGCGCGCCcccgGGgCCCGCg- -3'
miRNA:   3'- cGGUGGaCGUGUGGcg--CCgGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 56627 0.66 0.540839
Target:  5'- cGCC-CCUGCGCacgcccgagaugGCCGaGGCCguguaCCGCUg -3'
miRNA:   3'- -CGGuGGACGUG------------UGGCgCCGG-----GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 123916 0.66 0.540839
Target:  5'- gGCgGCCgugacGCGgGCCGCcucGGCCUCGC-Cg -3'
miRNA:   3'- -CGgUGGa----CGUgUGGCG---CCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 38070 0.66 0.540839
Target:  5'- cCCGCCUGCcucgaggaggugACgGCCGCGcuGCUCgCGCUCc -3'
miRNA:   3'- cGGUGGACG------------UG-UGGCGC--CGGG-GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 104083 0.66 0.540839
Target:  5'- cGCCgcGCCgagcaGCACGCCuucgacGCGGCCgaGUUCg -3'
miRNA:   3'- -CGG--UGGa----CGUGUGG------CGCCGGggCGAG- -5'
29370 3' -63.7 NC_006151.1 + 16017 0.66 0.537982
Target:  5'- cCCcUCUGUugugcccucaauaaACACgGCGGCCcgCCGCUCg -3'
miRNA:   3'- cGGuGGACG--------------UGUGgCGCCGG--GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 73496 0.66 0.535131
Target:  5'- cGCCACCUGCAUcugGCCcauaaaguacgacucGCuGGCCuucuCCGCa- -3'
miRNA:   3'- -CGGUGGACGUG---UGG---------------CG-CCGG----GGCGag -5'
29370 3' -63.7 NC_006151.1 + 130799 0.66 0.531337
Target:  5'- uCCAgCUggcGUACGCgGCguccgGGUCCCGCUCg -3'
miRNA:   3'- cGGUgGA---CGUGUGgCG-----CCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 135801 0.66 0.531337
Target:  5'- uGCCggGCgaGCGCGCCGaGGCCgaGCUUu -3'
miRNA:   3'- -CGG--UGgaCGUGUGGCgCCGGggCGAG- -5'
29370 3' -63.7 NC_006151.1 + 11636 0.66 0.531337
Target:  5'- cCCACCcGCACAgCGCGcacgccgaccGCCCgCGUUUg -3'
miRNA:   3'- cGGUGGaCGUGUgGCGC----------CGGG-GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 36115 0.66 0.531337
Target:  5'- gGCCGCCguccuCGCgGCCGCGGCCggagccacgaggCCGCc- -3'
miRNA:   3'- -CGGUGGac---GUG-UGGCGCCGG------------GGCGag -5'
29370 3' -63.7 NC_006151.1 + 54943 0.66 0.531337
Target:  5'- uGCCACgcgCUGCGCGagcaCGCGcGCCUCugccagcuGCUCa -3'
miRNA:   3'- -CGGUG---GACGUGUg---GCGC-CGGGG--------CGAG- -5'
29370 3' -63.7 NC_006151.1 + 56163 0.66 0.531337
Target:  5'- gGCCGCCga-GgACCGCGuGCUCuCGCUg -3'
miRNA:   3'- -CGGUGGacgUgUGGCGC-CGGG-GCGAg -5'
29370 3' -63.7 NC_006151.1 + 57300 0.66 0.531337
Target:  5'- cGCgGCCUugGCGgCGCGGCCgaagCCGCUg -3'
miRNA:   3'- -CGgUGGAcgUGUgGCGCCGG----GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 84903 0.66 0.531337
Target:  5'- gGCCAUggUGUACGCCGCgcgcGGCgCCGcCUCc -3'
miRNA:   3'- -CGGUGg-ACGUGUGGCG----CCGgGGC-GAG- -5'
29370 3' -63.7 NC_006151.1 + 109117 0.66 0.531337
Target:  5'- aGCCGCCggcccGCGC-CCGcCGGCCgggcaccuCCGuCUCc -3'
miRNA:   3'- -CGGUGGa----CGUGuGGC-GCCGG--------GGC-GAG- -5'
29370 3' -63.7 NC_006151.1 + 131790 0.66 0.531337
Target:  5'- cGCCGCCgucgucaGCGCGCCauccuccuCGGCCUCgGCUa -3'
miRNA:   3'- -CGGUGGa------CGUGUGGc-------GCCGGGG-CGAg -5'
29370 3' -63.7 NC_006151.1 + 112437 0.66 0.531337
Target:  5'- cGCCGCC-GC-CGCCGCGcGCCauggGCUg -3'
miRNA:   3'- -CGGUGGaCGuGUGGCGC-CGGgg--CGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.