miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 11636 0.66 0.531337
Target:  5'- cCCACCcGCACAgCGCGcacgccgaccGCCCgCGUUUg -3'
miRNA:   3'- cGGUGGaCGUGUgGCGC----------CGGG-GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 12280 0.68 0.406513
Target:  5'- gGCCGCggGCccauucaccauCGCCGCGGUCCgaGCUCg -3'
miRNA:   3'- -CGGUGgaCGu----------GUGGCGCCGGGg-CGAG- -5'
29370 3' -63.7 NC_006151.1 + 12661 0.69 0.358916
Target:  5'- aGCC-CCcGC-CGCCGCGGCCgcagCCGC-Cg -3'
miRNA:   3'- -CGGuGGaCGuGUGGCGCCGG----GGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 12832 0.7 0.321629
Target:  5'- cGCCGCCccccgcgGcCACACCgagccuucuccgcGCGGUCCCGcCUCu -3'
miRNA:   3'- -CGGUGGa------C-GUGUGG-------------CGCCGGGGC-GAG- -5'
29370 3' -63.7 NC_006151.1 + 14142 0.67 0.449076
Target:  5'- cGCC-CCgaGCcgacgaggaGCCGC-GCCCCGCUCg -3'
miRNA:   3'- -CGGuGGa-CGug-------UGGCGcCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 15059 0.66 0.521897
Target:  5'- gGCC-CCgGCGccuuCugCGCGGCCCC-CUg -3'
miRNA:   3'- -CGGuGGaCGU----GugGCGCCGGGGcGAg -5'
29370 3' -63.7 NC_006151.1 + 15238 0.75 0.149037
Target:  5'- gGCCcCCUGCugGCa--GGCCCUGCUCc -3'
miRNA:   3'- -CGGuGGACGugUGgcgCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 15349 0.66 0.540839
Target:  5'- cCCGCC-GguCAUCGaGGgCCCGCUCu -3'
miRNA:   3'- cGGUGGaCguGUGGCgCCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 15904 0.67 0.475764
Target:  5'- cGCC-CCgacgcgGCcCGCCGCcGCCCCGUg- -3'
miRNA:   3'- -CGGuGGa-----CGuGUGGCGcCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 16017 0.66 0.537982
Target:  5'- cCCcUCUGUugugcccucaauaaACACgGCGGCCcgCCGCUCg -3'
miRNA:   3'- cGGuGGACG--------------UGUGgCGCCGG--GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 17815 0.67 0.476667
Target:  5'- cCCuCCUGgGCGCgGCGGggcgggcggccaccaCCCGCUCg -3'
miRNA:   3'- cGGuGGACgUGUGgCGCCg--------------GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 18742 0.67 0.449076
Target:  5'- cGUCGCC-GC-CGCCGgGGCCCCa--- -3'
miRNA:   3'- -CGGUGGaCGuGUGGCgCCGGGGcgag -5'
29370 3' -63.7 NC_006151.1 + 19327 0.69 0.366573
Target:  5'- cGCCACaaagaaCACGgcCCGCGGCCCCGaggCg -3'
miRNA:   3'- -CGGUGgac---GUGU--GGCGCCGGGGCga-G- -5'
29370 3' -63.7 NC_006151.1 + 19465 0.69 0.382222
Target:  5'- cGgCACCUcggGCGgcagguaguCGCCGauGCCCCGCUCc -3'
miRNA:   3'- -CgGUGGA---CGU---------GUGGCgcCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 20656 0.72 0.23995
Target:  5'- gGCCGUCaGCACAaagagguCCGUGGUCCCGUUCa -3'
miRNA:   3'- -CGGUGGaCGUGU-------GGCGCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 20762 0.67 0.457881
Target:  5'- uCCACCgcggcggacGCGCGCCgggcgaGCGGCUCgCGCUUg -3'
miRNA:   3'- cGGUGGa--------CGUGUGG------CGCCGGG-GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 24522 0.71 0.2822
Target:  5'- cGCCGCCacguUGCA-GCgCGCGGCCCCGaggUCc -3'
miRNA:   3'- -CGGUGG----ACGUgUG-GCGCCGGGGCg--AG- -5'
29370 3' -63.7 NC_006151.1 + 24856 0.66 0.521897
Target:  5'- cCCACCUucaGCAcCACCGUGuccGCCUCGCcCg -3'
miRNA:   3'- cGGUGGA---CGU-GUGGCGC---CGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 24959 0.74 0.185486
Target:  5'- cGUgACgaUGCGCGCCGCGGCCugCCGCgUCa -3'
miRNA:   3'- -CGgUGg-ACGUGUGGCGCCGG--GGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 25420 0.68 0.404041
Target:  5'- cGCCGCCccacGCGCGCCcgucaucccuccccGCGGCcgCCCGCc- -3'
miRNA:   3'- -CGGUGGa---CGUGUGG--------------CGCCG--GGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.