miRNA display CGI


Results 1 - 20 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 537 0.7 0.343941
Target:  5'- cUCAUCUGCAUAUCGCgccGGCCCCuuccGCUUc -3'
miRNA:   3'- cGGUGGACGUGUGGCG---CCGGGG----CGAG- -5'
29370 3' -63.7 NC_006151.1 + 600 0.7 0.343941
Target:  5'- cUCAUCUGCAUAUCGCgccGGCCCCuuccGCUUc -3'
miRNA:   3'- cGGUGGACGUGUGGCG---CCGGGG----CGAG- -5'
29370 3' -63.7 NC_006151.1 + 696 0.69 0.382222
Target:  5'- cGCCgaGCCUGCcccuuccgucGCACCGgGGgUCCGCg- -3'
miRNA:   3'- -CGG--UGGACG----------UGUGGCgCCgGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 1680 0.76 0.122239
Target:  5'- cGCCGCCgaGCccucCGCCGCGGCCgCCGC-Cg -3'
miRNA:   3'- -CGGUGGa-CGu---GUGGCGCCGG-GGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 2182 0.66 0.550397
Target:  5'- gGCC-CCgGCGC-CCGaGGcCCCCGCg- -3'
miRNA:   3'- -CGGuGGaCGUGuGGCgCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 3090 0.66 0.521897
Target:  5'- gGCgGCgaGCAgCGCCGagaGGCCgCCGCg- -3'
miRNA:   3'- -CGgUGgaCGU-GUGGCg--CCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 3690 0.67 0.466778
Target:  5'- gGCC-CCggGCGCGCgGCGcuucuucuuGCgCCGCUCg -3'
miRNA:   3'- -CGGuGGa-CGUGUGgCGC---------CGgGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 4121 0.72 0.229577
Target:  5'- cGCgGCCUGC-CGCCGCucggccgggccGGCCCCGgggaUCg -3'
miRNA:   3'- -CGgUGGACGuGUGGCG-----------CCGGGGCg---AG- -5'
29370 3' -63.7 NC_006151.1 + 4664 0.71 0.297759
Target:  5'- gGCCugCauccgcggguucUGCAgccaggacauggccuCGCCgGCGGCCCCGCUg -3'
miRNA:   3'- -CGGugG------------ACGU---------------GUGG-CGCCGGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 4793 0.7 0.32942
Target:  5'- gGCCGCg-GCGCgguagcggGCCGCGGCCUgGCg- -3'
miRNA:   3'- -CGGUGgaCGUG--------UGGCGCCGGGgCGag -5'
29370 3' -63.7 NC_006151.1 + 5307 0.66 0.550397
Target:  5'- uGCCGCugcugcuggagCUGCugaaGCCGCGGCCgCgGCg- -3'
miRNA:   3'- -CGGUG-----------GACGug--UGGCGCCGG-GgCGag -5'
29370 3' -63.7 NC_006151.1 + 5631 0.7 0.301752
Target:  5'- cGCCGCCgccGgGCGCCGagacCGGCCCgGCg- -3'
miRNA:   3'- -CGGUGGa--CgUGUGGC----GCCGGGgCGag -5'
29370 3' -63.7 NC_006151.1 + 5688 0.78 0.102533
Target:  5'- cCCGCCgUGCcgGCGCUGCGGCCaCCGCUg -3'
miRNA:   3'- cGGUGG-ACG--UGUGGCGCCGG-GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 5734 0.68 0.398309
Target:  5'- cGCCGggguCCgagGcCGCGCCGcCGGCCCgGgCUCa -3'
miRNA:   3'- -CGGU----GGa--C-GUGUGGC-GCCGGGgC-GAG- -5'
29370 3' -63.7 NC_006151.1 + 6839 0.71 0.269732
Target:  5'- aCCAUUUGCAUGCC-CGGcCCCCGCg- -3'
miRNA:   3'- cGGUGGACGUGUGGcGCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 7081 0.67 0.449076
Target:  5'- cGCCucugAUUUGCAUGCC-CGG-CCCGCUCu -3'
miRNA:   3'- -CGG----UGGACGUGUGGcGCCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 9039 0.67 0.457881
Target:  5'- cCCGCCgggGCGCcCCGCGuGCUCCGg-- -3'
miRNA:   3'- cGGUGGa--CGUGuGGCGC-CGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 10508 0.68 0.418176
Target:  5'- cGCCGCCgcagGCGCGuCCccgGCGcgggcgccucuccacGCCCCGUUCc -3'
miRNA:   3'- -CGGUGGa---CGUGU-GG---CGC---------------CGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 10686 0.71 0.278412
Target:  5'- cGCCGCCcccccgugaucacguUcGCGCACCGCGGCgCCaGCa- -3'
miRNA:   3'- -CGGUGG---------------A-CGUGUGGCGCCGgGG-CGag -5'
29370 3' -63.7 NC_006151.1 + 11350 0.83 0.045037
Target:  5'- gGCCGCCcgcggGCGCuACCGCGcGCUCCGCUCg -3'
miRNA:   3'- -CGGUGGa----CGUG-UGGCGC-CGGGGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.