miRNA display CGI


Results 41 - 60 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 26978 0.67 0.493987
Target:  5'- -gCGCgCUGCGCAgCGgGGCgCuCUGCUCg -3'
miRNA:   3'- cgGUG-GACGUGUgGCgCCG-G-GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 27198 0.72 0.234989
Target:  5'- gGCCGCgCaGaagGCGCCGgGGCCCCGCg- -3'
miRNA:   3'- -CGGUG-GaCg--UGUGGCgCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 30562 0.73 0.199286
Target:  5'- cGCCGCaC-GCGCcgucCCGCGGCCCCGUc- -3'
miRNA:   3'- -CGGUG-GaCGUGu---GGCGCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 31022 0.66 0.560006
Target:  5'- cGCCGCCgcgGC-CcUCGCGGCCCgGg-- -3'
miRNA:   3'- -CGGUGGa--CGuGuGGCGCCGGGgCgag -5'
29370 3' -63.7 NC_006151.1 + 31193 0.68 0.440365
Target:  5'- uCCGCC-GCACAgUGUGGCCCgCGUcCa -3'
miRNA:   3'- cGGUGGaCGUGUgGCGCCGGG-GCGaG- -5'
29370 3' -63.7 NC_006151.1 + 31834 0.71 0.2822
Target:  5'- cGCCgGCCUcgGCcCAcCCGCGGCgucacCCCGCUCu -3'
miRNA:   3'- -CGG-UGGA--CGuGU-GGCGCCG-----GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 32050 0.67 0.449076
Target:  5'- aGCCGCCucUGCA-GCCGCcGCCCgCGC-Cg -3'
miRNA:   3'- -CGGUGG--ACGUgUGGCGcCGGG-GCGaG- -5'
29370 3' -63.7 NC_006151.1 + 32243 0.68 0.398309
Target:  5'- gGCCGCg-GCG-ACCGCcGCCgCCGCUCu -3'
miRNA:   3'- -CGGUGgaCGUgUGGCGcCGG-GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 35139 0.69 0.381429
Target:  5'- cUCAUUgGCGCGCCGCGGCCaagauggCCGCa- -3'
miRNA:   3'- cGGUGGaCGUGUGGCGCCGG-------GGCGag -5'
29370 3' -63.7 NC_006151.1 + 35853 0.77 0.110583
Target:  5'- cGCCGCCcGCucuccgcgcucgGCGCC-CGGCCUCGCUCa -3'
miRNA:   3'- -CGGUGGaCG------------UGUGGcGCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 35977 0.67 0.503217
Target:  5'- cGCCGCCgcgGCcgaggaagaggGCAUCGCguccGGCCCCGaCg- -3'
miRNA:   3'- -CGGUGGa--CG-----------UGUGGCG----CCGGGGC-Gag -5'
29370 3' -63.7 NC_006151.1 + 36115 0.66 0.531337
Target:  5'- gGCCGCCguccuCGCgGCCGCGGCCggagccacgaggCCGCc- -3'
miRNA:   3'- -CGGUGGac---GUG-UGGCGCCGG------------GGCGag -5'
29370 3' -63.7 NC_006151.1 + 36351 0.68 0.443838
Target:  5'- gGCCGCCgaccccggcaGCACucgcagcggcagagGCCGgGGCCCCcggcggccccgggcGCUCg -3'
miRNA:   3'- -CGGUGGa---------CGUG--------------UGGCgCCGGGG--------------CGAG- -5'
29370 3' -63.7 NC_006151.1 + 36571 0.69 0.358916
Target:  5'- gGCCGCagcgccgGCACGgCGgGGgCCCGCUUc -3'
miRNA:   3'- -CGGUGga-----CGUGUgGCgCCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 36680 0.75 0.160399
Target:  5'- cGUCACCaucaccaGCACCGCGaGCCCCuGCUCg -3'
miRNA:   3'- -CGGUGGacg----UGUGGCGC-CGGGG-CGAG- -5'
29370 3' -63.7 NC_006151.1 + 36747 0.68 0.414823
Target:  5'- gGCCGCUUgGCGC-CCG-GaGCCCCGuCUCc -3'
miRNA:   3'- -CGGUGGA-CGUGuGGCgC-CGGGGC-GAG- -5'
29370 3' -63.7 NC_006151.1 + 36806 0.66 0.511588
Target:  5'- aCCACCgucGCcgucgagaccgucGC-CCGCGGCCCCGa-- -3'
miRNA:   3'- cGGUGGa--CG-------------UGuGGCGCCGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 36911 0.68 0.398309
Target:  5'- cGCCgcGCCggagagGCGCccuccGCCGCGGCCgCgGCUUc -3'
miRNA:   3'- -CGG--UGGa-----CGUG-----UGGCGCCGG-GgCGAG- -5'
29370 3' -63.7 NC_006151.1 + 37023 0.69 0.382222
Target:  5'- cGCCGCCgccGCGCGgCGCucGGCCUC-CUCc -3'
miRNA:   3'- -CGGUGGa--CGUGUgGCG--CCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 37160 0.85 0.031226
Target:  5'- cGCCACCgucuccgccgGCGCccGCCGCGGCCCCGCg- -3'
miRNA:   3'- -CGGUGGa---------CGUG--UGGCGCCGGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.