miRNA display CGI


Results 61 - 80 of 366 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 37325 0.67 0.449076
Target:  5'- cGCCgACCgacggGC-CGCUGCucaCCCCGCUCg -3'
miRNA:   3'- -CGG-UGGa----CGuGUGGCGcc-GGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 37464 0.68 0.431751
Target:  5'- cGCgGCCcGCuaccGCGCCGCGGCcgggCCCGUg- -3'
miRNA:   3'- -CGgUGGaCG----UGUGGCGCCG----GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 37703 0.68 0.443838
Target:  5'- cGCCGCUgccGCACaucggggacgccaugGCCGCccaGGaCCCGCUCu -3'
miRNA:   3'- -CGGUGGa--CGUG---------------UGGCG---CCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 37757 0.67 0.449076
Target:  5'- uGCCGCaCgcgGUgaGCGCCGUGGCCaugagccgCCGCUa -3'
miRNA:   3'- -CGGUG-Ga--CG--UGUGGCGCCGG--------GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 37854 0.72 0.234989
Target:  5'- gGCCuACCcggGcCGCGCCGCGGacCCCCGCg- -3'
miRNA:   3'- -CGG-UGGa--C-GUGUGGCGCC--GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 37905 0.68 0.440365
Target:  5'- gGCCcUCUGCGC-CCGC-GUCCCGC-Cg -3'
miRNA:   3'- -CGGuGGACGUGuGGCGcCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 37934 0.78 0.090332
Target:  5'- cGCCGCC-GCGCagcccgGCCGCGuGCCCCGCg- -3'
miRNA:   3'- -CGGUGGaCGUG------UGGCGC-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 37975 0.66 0.560006
Target:  5'- -aCGCCUGCGuccuggccUGCCGCGGCguccucgagcgCCUGCUg -3'
miRNA:   3'- cgGUGGACGU--------GUGGCGCCG-----------GGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 38070 0.66 0.540839
Target:  5'- cCCGCCUGCcucgaggaggugACgGCCGCGcuGCUCgCGCUCc -3'
miRNA:   3'- cGGUGGACG------------UG-UGGCGC--CGGG-GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 38174 0.73 0.204081
Target:  5'- cGUCGCC--CGCACCGUGGCgCCGCUg -3'
miRNA:   3'- -CGGUGGacGUGUGGCGCCGgGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 38234 0.8 0.064747
Target:  5'- gGCCGCCUGgaccUACGCCGCGGCCCUcUUCg -3'
miRNA:   3'- -CGGUGGAC----GUGUGGCGCCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 38264 0.75 0.15274
Target:  5'- cGCC-CCgGCcaACgugGCCGCGGCCCgGCUCg -3'
miRNA:   3'- -CGGuGGaCG--UG---UGGCGCCGGGgCGAG- -5'
29370 3' -63.7 NC_006151.1 + 38300 0.7 0.32942
Target:  5'- gGCCGCC-GCGCGgcccgggcCCGCGGagCCCGCg- -3'
miRNA:   3'- -CGGUGGaCGUGU--------GGCGCCg-GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 38686 0.66 0.521897
Target:  5'- gGCC-CCgGCGCaagcGCCGCucccucggacucGGgCCCGCUCc -3'
miRNA:   3'- -CGGuGGaCGUG----UGGCG------------CCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 38849 0.66 0.540839
Target:  5'- gGCCGgCgagacccaCACGCCGCGGCCCUccgagGCg- -3'
miRNA:   3'- -CGGUgGac------GUGUGGCGCCGGGG-----CGag -5'
29370 3' -63.7 NC_006151.1 + 38891 0.7 0.343941
Target:  5'- cGCCGCCUacuGCcCGCCcgagGUGGCCCgCGcCUCg -3'
miRNA:   3'- -CGGUGGA---CGuGUGG----CGCCGGG-GC-GAG- -5'
29370 3' -63.7 NC_006151.1 + 38996 0.82 0.051293
Target:  5'- aUCGCC-GCGCGCCGCGgcGCCCCGCUCc -3'
miRNA:   3'- cGGUGGaCGUGUGGCGC--CGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 39140 0.68 0.398309
Target:  5'- cGCCcgGCCUGggaccCGCGCCGCGGCggccucucggCgCUGCUCg -3'
miRNA:   3'- -CGG--UGGAC-----GUGUGGCGCCG----------G-GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 39339 0.73 0.21907
Target:  5'- cGCgGCUcgGCGCGgCGCGGCgCCgGCUCa -3'
miRNA:   3'- -CGgUGGa-CGUGUgGCGCCG-GGgCGAG- -5'
29370 3' -63.7 NC_006151.1 + 39454 0.7 0.315357
Target:  5'- gGCCGCCcagugcgccgUGCGCuggcccggguGCCGCGaGCUCCGCg- -3'
miRNA:   3'- -CGGUGG----------ACGUG----------UGGCGC-CGGGGCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.