miRNA display CGI


Results 61 - 80 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 107618 0.72 0.224271
Target:  5'- cGCCGCCcGCcaaGC-CCGUGGagacgaCCCCGCUCa -3'
miRNA:   3'- -CGGUGGaCG---UGuGGCGCC------GGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 67988 0.72 0.224271
Target:  5'- gGCgGCCcGCcgGCGCCGCGGCCacggGCUCg -3'
miRNA:   3'- -CGgUGGaCG--UGUGGCGCCGGgg--CGAG- -5'
29370 3' -63.7 NC_006151.1 + 109653 0.72 0.229577
Target:  5'- aGCCGCCgcUGCcgcCACCGCcGCCCC-CUCa -3'
miRNA:   3'- -CGGUGG--ACGu--GUGGCGcCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 39848 0.72 0.229577
Target:  5'- gGCCGCCgggGCcucgccgaGCuCCGCGGCCCCGa-- -3'
miRNA:   3'- -CGGUGGa--CG--------UGuGGCGCCGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 86183 0.72 0.229577
Target:  5'- gGCCGCC-GCGCugCccccgGCGGgCCCGCUg -3'
miRNA:   3'- -CGGUGGaCGUGugG-----CGCCgGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 85173 0.72 0.229577
Target:  5'- cGCCGC--GgGCGCCGCcGCCCCGCUg -3'
miRNA:   3'- -CGGUGgaCgUGUGGCGcCGGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 4121 0.72 0.229577
Target:  5'- cGCgGCCUGC-CGCCGCucggccgggccGGCCCCGgggaUCg -3'
miRNA:   3'- -CGgUGGACGuGUGGCG-----------CCGGGGCg---AG- -5'
29370 3' -63.7 NC_006151.1 + 97564 0.72 0.234989
Target:  5'- cGCCGCCgagGCGCAgcUCGCGGUCCaCGUccaUCa -3'
miRNA:   3'- -CGGUGGa--CGUGU--GGCGCCGGG-GCG---AG- -5'
29370 3' -63.7 NC_006151.1 + 134833 0.72 0.234989
Target:  5'- gGCgACCgcgcgcGCACACaCGCgGGgCCCGCUCu -3'
miRNA:   3'- -CGgUGGa-----CGUGUG-GCG-CCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 27198 0.72 0.234989
Target:  5'- gGCCGCgCaGaagGCGCCGgGGCCCCGCg- -3'
miRNA:   3'- -CGGUG-GaCg--UGUGGCgCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 37854 0.72 0.234989
Target:  5'- gGCCuACCcggGcCGCGCCGCGGacCCCCGCg- -3'
miRNA:   3'- -CGG-UGGa--C-GUGUGGCGCC--GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 103894 0.72 0.234989
Target:  5'- cGCCACCUgGCgcuggaggugGCGCgCGCGGCCgCCGUg- -3'
miRNA:   3'- -CGGUGGA-CG----------UGUG-GCGCCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 20656 0.72 0.23995
Target:  5'- gGCCGUCaGCACAaagagguCCGUGGUCCCGUUCa -3'
miRNA:   3'- -CGGUGGaCGUGU-------GGCGCCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 136400 0.72 0.240507
Target:  5'- uGCUGCCUGagcggcUACGCgCGgGGCCCCGCg- -3'
miRNA:   3'- -CGGUGGAC------GUGUG-GCgCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 136963 0.72 0.240507
Target:  5'- cGCCGCCUGCugGa-GCuGGCCgCCGCg- -3'
miRNA:   3'- -CGGUGGACGugUggCG-CCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 131118 0.72 0.240507
Target:  5'- gGCCGCg-GCGCgggagGCCGCGGCgCCGCg- -3'
miRNA:   3'- -CGGUGgaCGUG-----UGGCGCCGgGGCGag -5'
29370 3' -63.7 NC_006151.1 + 84790 0.72 0.240507
Target:  5'- cGCCGCCgaggagGCGCccgaggcgACCGCGGCCgCGgaCg -3'
miRNA:   3'- -CGGUGGa-----CGUG--------UGGCGCCGGgGCgaG- -5'
29370 3' -63.7 NC_006151.1 + 121875 0.72 0.240507
Target:  5'- cGCCGCUcacgUGCGCGCUGC-GCCUggCGCUCg -3'
miRNA:   3'- -CGGUGG----ACGUGUGGCGcCGGG--GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 135182 0.72 0.246133
Target:  5'- cGCCGgCUGC-CGCCGCcgGGCCagucccagcguCCGCUCc -3'
miRNA:   3'- -CGGUgGACGuGUGGCG--CCGG-----------GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 66870 0.72 0.246133
Target:  5'- gGCgGCgCgaaggGCGCGCC-CGGCCCCGCg- -3'
miRNA:   3'- -CGgUG-Ga----CGUGUGGcGCCGGGGCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.