miRNA display CGI


Results 61 - 80 of 366 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 36806 0.66 0.511588
Target:  5'- aCCACCgucGCcgucgagaccgucGC-CCGCGGCCCCGa-- -3'
miRNA:   3'- cGGUGGa--CG-------------UGuGGCGCCGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 134294 0.66 0.511588
Target:  5'- cCCACgggcgcaauuuuaUUGCACGCCGCuGcGCCUCGCg- -3'
miRNA:   3'- cGGUG-------------GACGUGUGGCG-C-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 105907 0.67 0.50693
Target:  5'- gGCCAUgCUGUGCACCGaCGagggcgccgagcugcGCCcgCCGCUCa -3'
miRNA:   3'- -CGGUG-GACGUGUGGC-GC---------------CGG--GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 130245 0.67 0.503217
Target:  5'- aGCCGCagaagGCGCggaagaggccgGCgCGCGGCCCCGa-- -3'
miRNA:   3'- -CGGUGga---CGUG-----------UG-GCGCCGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 50119 0.67 0.503217
Target:  5'- uCCGCggUGCGCGCCcgacgcccacGCGaGCCCCGCg- -3'
miRNA:   3'- cGGUGg-ACGUGUGG----------CGC-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 67199 0.67 0.503217
Target:  5'- gGCCACCUu----CCGCGGCaUCCGCgUCg -3'
miRNA:   3'- -CGGUGGAcguguGGCGCCG-GGGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 87167 0.67 0.503217
Target:  5'- -aCGCCguacuacGCGC-CCGCGGCgCCGC-Cg -3'
miRNA:   3'- cgGUGGa------CGUGuGGCGCCGgGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 35977 0.67 0.503217
Target:  5'- cGCCGCCgcgGCcgaggaagaggGCAUCGCguccGGCCCCGaCg- -3'
miRNA:   3'- -CGGUGGa--CG-----------UGUGGCG----CCGGGGC-Gag -5'
29370 3' -63.7 NC_006151.1 + 56326 0.67 0.503217
Target:  5'- aGCCuggGCCggugGCuggaGCGCgCGCGcGCCCCGC-Cg -3'
miRNA:   3'- -CGG---UGGa---CG----UGUG-GCGC-CGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 138628 0.67 0.503217
Target:  5'- cGCCGCCggggGCGCGCCGgacugggaGGCCUucaaCGC-Ca -3'
miRNA:   3'- -CGGUGGa---CGUGUGGCg-------CCGGG----GCGaG- -5'
29370 3' -63.7 NC_006151.1 + 106534 0.67 0.502291
Target:  5'- gGCCACCUucaccgugcuggcGCGCAugugcauccccCCGCGGCUgCuCUCg -3'
miRNA:   3'- -CGGUGGA-------------CGUGU-----------GGCGCCGGgGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 26978 0.67 0.493987
Target:  5'- -gCGCgCUGCGCAgCGgGGCgCuCUGCUCg -3'
miRNA:   3'- cgGUG-GACGUGUgGCgCCG-G-GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 50370 0.67 0.493987
Target:  5'- uCCGCCggcggGgGCGagaCGCgGGCCCCGCg- -3'
miRNA:   3'- cGGUGGa----CgUGUg--GCG-CCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 51207 0.67 0.493987
Target:  5'- gGCCAgCagGcCGC-CCGCGGgCCCGCg- -3'
miRNA:   3'- -CGGUgGa-C-GUGuGGCGCCgGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 62008 0.67 0.493987
Target:  5'- gGUgACgUGCGCGCCGCccuGGCggccagcccCCCGCUg -3'
miRNA:   3'- -CGgUGgACGUGUGGCG---CCG---------GGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 120325 0.67 0.493987
Target:  5'- aGCCuCUcGgACGCCGCGcGCgCCCGCg- -3'
miRNA:   3'- -CGGuGGaCgUGUGGCGC-CG-GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 69339 0.67 0.493987
Target:  5'- cGCCGCCcGCG-AgCGCGGCguagCCCGCg- -3'
miRNA:   3'- -CGGUGGaCGUgUgGCGCCG----GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 119197 0.67 0.493987
Target:  5'- cGCCGCCgacGCGCGCaaggagggCGcCGGCCCCucGUUUa -3'
miRNA:   3'- -CGGUGGa--CGUGUG--------GC-GCCGGGG--CGAG- -5'
29370 3' -63.7 NC_006151.1 + 107894 0.67 0.484834
Target:  5'- gGCCcaGCC-GCcCGCCGCGGCCaaGC-Cg -3'
miRNA:   3'- -CGG--UGGaCGuGUGGCGCCGGggCGaG- -5'
29370 3' -63.7 NC_006151.1 + 50616 0.67 0.484834
Target:  5'- cGCCGCCgcggcagcgUGCACGCCuCGGCgacggCCGCg- -3'
miRNA:   3'- -CGGUGG---------ACGUGUGGcGCCGg----GGCGag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.