miRNA display CGI


Results 81 - 100 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 107894 0.67 0.484834
Target:  5'- gGCCcaGCC-GCcCGCCGCGGCCaaGC-Cg -3'
miRNA:   3'- -CGG--UGGaCGuGUGGCGCCGGggCGaG- -5'
29370 3' -63.7 NC_006151.1 + 110203 0.67 0.484834
Target:  5'- cGCCGCCUGCGgGagaCGCGGacgaCC-CUCa -3'
miRNA:   3'- -CGGUGGACGUgUg--GCGCCgg--GGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 123225 0.67 0.483923
Target:  5'- gGCCGCCggguuccGCGCACgGCgcgcguucugcgaGGCCgCCGCg- -3'
miRNA:   3'- -CGGUGGa------CGUGUGgCG-------------CCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 58925 0.67 0.483923
Target:  5'- cCCGCCgcgGCcgucauaGCGCCGCaaaguccacGGCCCC-CUCg -3'
miRNA:   3'- cGGUGGa--CG-------UGUGGCG---------CCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 17815 0.67 0.476667
Target:  5'- cCCuCCUGgGCGCgGCGGggcgggcggccaccaCCCGCUCg -3'
miRNA:   3'- cGGuGGACgUGUGgCGCCg--------------GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 102232 0.67 0.475764
Target:  5'- aGgCGCC-GUGCGCCGUcGCCgCGCUCu -3'
miRNA:   3'- -CgGUGGaCGUGUGGCGcCGGgGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 48310 0.67 0.475764
Target:  5'- uGCCACCccUACAUCGCGuaCUCGCUg -3'
miRNA:   3'- -CGGUGGacGUGUGGCGCcgGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 15904 0.67 0.475764
Target:  5'- cGCC-CCgacgcgGCcCGCCGCcGCCCCGUg- -3'
miRNA:   3'- -CGGuGGa-----CGuGUGGCGcCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 59448 0.67 0.475764
Target:  5'- cGCCGCCgccGCG-ACCGCGGCCgaGUcCa -3'
miRNA:   3'- -CGGUGGa--CGUgUGGCGCCGGggCGaG- -5'
29370 3' -63.7 NC_006151.1 + 125196 0.67 0.475764
Target:  5'- cGCCGgCgucgUGgGCcCCGCGGcCCCCGCg- -3'
miRNA:   3'- -CGGUgG----ACgUGuGGCGCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 127468 0.67 0.474861
Target:  5'- -gCGCUgggcgGCGCggaacgaGCCGCGGaCCCCGCg- -3'
miRNA:   3'- cgGUGGa----CGUG-------UGGCGCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 76703 0.67 0.466778
Target:  5'- uGgCGCggGCGCGCCGCGGCCgCCuuUUa -3'
miRNA:   3'- -CgGUGgaCGUGUGGCGCCGG-GGcgAG- -5'
29370 3' -63.7 NC_006151.1 + 101720 0.67 0.466778
Target:  5'- uGCCcuCCgUGCAC-CCGaUGGCCCUGC-Cg -3'
miRNA:   3'- -CGGu-GG-ACGUGuGGC-GCCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 3690 0.67 0.466778
Target:  5'- gGCC-CCggGCGCGCgGCGcuucuucuuGCgCCGCUCg -3'
miRNA:   3'- -CGGuGGa-CGUGUGgCGC---------CGgGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 102262 0.67 0.466778
Target:  5'- aGCCcauCCUGgGCGCgcugccggagCGCGGCCCgGC-Cg -3'
miRNA:   3'- -CGGu--GGACgUGUG----------GCGCCGGGgCGaG- -5'
29370 3' -63.7 NC_006151.1 + 65991 0.67 0.457881
Target:  5'- gGCCGCgaGCGCGuccuCCGCGGCgucgagcgccUCCGCa- -3'
miRNA:   3'- -CGGUGgaCGUGU----GGCGCCG----------GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 40151 0.67 0.457881
Target:  5'- aCgGCCgGC-C-CCGCGG-CCCGCUCg -3'
miRNA:   3'- cGgUGGaCGuGuGGCGCCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 9039 0.67 0.457881
Target:  5'- cCCGCCgggGCGCcCCGCGuGCUCCGg-- -3'
miRNA:   3'- cGGUGGa--CGUGuGGCGC-CGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 71610 0.67 0.457881
Target:  5'- -aCACCUcCAcCACCGCGGCCUU-CUCg -3'
miRNA:   3'- cgGUGGAcGU-GUGGCGCCGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 70724 0.67 0.457881
Target:  5'- cGCCGCCUGCugGCC--GGCa-CGCUg -3'
miRNA:   3'- -CGGUGGACGugUGGcgCCGggGCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.