miRNA display CGI


Results 81 - 100 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 102925 0.72 0.257712
Target:  5'- gGCCGCCgaggagcggcUGCGCGCgcuggaCGCGGCgCCCGC-Cg -3'
miRNA:   3'- -CGGUGG----------ACGUGUG------GCGCCG-GGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 57711 0.71 0.263066
Target:  5'- gGCCACgaGCGCcggcuugACCGCGcGCgCCCGCa- -3'
miRNA:   3'- -CGGUGgaCGUG-------UGGCGC-CG-GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 46987 0.71 0.263666
Target:  5'- cGCCGcuCCUGCcccCACUuCGGCuCCCGCUCc -3'
miRNA:   3'- -CGGU--GGACGu--GUGGcGCCG-GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 113594 0.71 0.269732
Target:  5'- aCCcCCUGUGCGCCGUGGCCgaGCg- -3'
miRNA:   3'- cGGuGGACGUGUGGCGCCGGggCGag -5'
29370 3' -63.7 NC_006151.1 + 6839 0.71 0.269732
Target:  5'- aCCAUUUGCAUGCC-CGGcCCCCGCg- -3'
miRNA:   3'- cGGUGGACGUGUGGcGCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 53507 0.71 0.269732
Target:  5'- gGCCAggUGCucCGCCGCGcGCCCCGUg- -3'
miRNA:   3'- -CGGUggACGu-GUGGCGC-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 113801 0.71 0.27591
Target:  5'- cGCgCugCUGCgGCGCCaCGGCCUcgCGCUCg -3'
miRNA:   3'- -CG-GugGACG-UGUGGcGCCGGG--GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 66078 0.71 0.27591
Target:  5'- gGCCGCCUGgGCuuccaCGCGGgCCUGCa- -3'
miRNA:   3'- -CGGUGGACgUGug---GCGCCgGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 10686 0.71 0.278412
Target:  5'- cGCCGCCcccccgugaucacguUcGCGCACCGCGGCgCCaGCa- -3'
miRNA:   3'- -CGGUGG---------------A-CGUGUGGCGCCGgGG-CGag -5'
29370 3' -63.7 NC_006151.1 + 98472 0.71 0.2822
Target:  5'- uGgCGCCUGCGCcacgACUGggacgagggcaCGGCCCCGCUg -3'
miRNA:   3'- -CgGUGGACGUG----UGGC-----------GCCGGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 31834 0.71 0.2822
Target:  5'- cGCCgGCCUcgGCcCAcCCGCGGCgucacCCCGCUCu -3'
miRNA:   3'- -CGG-UGGA--CGuGU-GGCGCCG-----GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 109226 0.71 0.2822
Target:  5'- cCCGCCccgGCGCagacccagccGCCGCGGUCuCCGCUg -3'
miRNA:   3'- cGGUGGa--CGUG----------UGGCGCCGG-GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 24522 0.71 0.2822
Target:  5'- cGCCGCCacguUGCA-GCgCGCGGCCCCGaggUCc -3'
miRNA:   3'- -CGGUGG----ACGUgUG-GCGCCGGGGCg--AG- -5'
29370 3' -63.7 NC_006151.1 + 134690 0.71 0.2822
Target:  5'- cGCCACCccGCGCGCCcCGaugcagcaccGCCCCGCg- -3'
miRNA:   3'- -CGGUGGa-CGUGUGGcGC----------CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 102007 0.71 0.284109
Target:  5'- cGCgCACCcGCGagcccaugggcuuCGCCGUccgggagcuggagcuGGCCCCGCUCg -3'
miRNA:   3'- -CG-GUGGaCGU-------------GUGGCG---------------CCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 82393 0.71 0.287958
Target:  5'- gGCCACgaGCuccGCGCCcgaggGCGGCCCCgagaggcgcgggcGCUCg -3'
miRNA:   3'- -CGGUGgaCG---UGUGG-----CGCCGGGG-------------CGAG- -5'
29370 3' -63.7 NC_006151.1 + 118354 0.71 0.288604
Target:  5'- cGCgCGCCUGCGagGCgGCGcGCgCCCGCUUc -3'
miRNA:   3'- -CG-GUGGACGUg-UGgCGC-CG-GGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 101843 0.71 0.288604
Target:  5'- cGCCGCCcccgccccgGCAC-CCgGCGGCgCaCCGCUCc -3'
miRNA:   3'- -CGGUGGa--------CGUGuGG-CGCCG-G-GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 51531 0.71 0.294464
Target:  5'- gGCCACCa--GCGCCGUcauggucGGUCUCGCUCg -3'
miRNA:   3'- -CGGUGGacgUGUGGCG-------CCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 125451 0.71 0.295121
Target:  5'- -gCGCCUGaaccccaGCGCCGUGGCCacggccgCGCUCg -3'
miRNA:   3'- cgGUGGACg------UGUGGCGCCGGg------GCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.