Results 41 - 60 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 3' | -63.7 | NC_006151.1 | + | 106783 | 0.66 | 0.53039 |
Target: 5'- cGCCuggACCUGgcCGCGgcggcggugcucgUCGgGGCCCCGCUg -3' miRNA: 3'- -CGG---UGGAC--GUGU-------------GGCgCCGGGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 104886 | 0.66 | 0.525665 |
Target: 5'- cGCCugCUGCGCgaggugguggacgcgGCgGCGGCgcgcgaCCGCg- -3' miRNA: 3'- -CGGugGACGUG---------------UGgCGCCGg-----GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 3090 | 0.66 | 0.521897 |
Target: 5'- gGCgGCgaGCAgCGCCGagaGGCCgCCGCg- -3' miRNA: 3'- -CGgUGgaCGU-GUGGCg--CCGG-GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 135611 | 0.66 | 0.521897 |
Target: 5'- aGCC-CUccCACgGCCGCGGCgCCCGCa- -3' miRNA: 3'- -CGGuGGacGUG-UGGCGCCG-GGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 24856 | 0.66 | 0.521897 |
Target: 5'- cCCACCUucaGCAcCACCGUGuccGCCUCGCcCg -3' miRNA: 3'- cGGUGGA---CGU-GUGGCGC---CGGGGCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 38686 | 0.66 | 0.521897 |
Target: 5'- gGCC-CCgGCGCaagcGCCGCucccucggacucGGgCCCGCUCc -3' miRNA: 3'- -CGGuGGaCGUG----UGGCG------------CCgGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 44963 | 0.66 | 0.521897 |
Target: 5'- gGCuCGCCUcuCAcCACCGuuGCCCCGCg- -3' miRNA: 3'- -CG-GUGGAc-GU-GUGGCgcCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 84159 | 0.66 | 0.521897 |
Target: 5'- uGCCAgCUGCGCGacuCgGCGcGCCUC-CUCg -3' miRNA: 3'- -CGGUgGACGUGU---GgCGC-CGGGGcGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 112823 | 0.66 | 0.521897 |
Target: 5'- aGCgCGCCUucGC-CACgCGCGuGCUCaCGCUCg -3' miRNA: 3'- -CG-GUGGA--CGuGUG-GCGC-CGGG-GCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 15059 | 0.66 | 0.521897 |
Target: 5'- gGCC-CCgGCGccuuCugCGCGGCCCC-CUg -3' miRNA: 3'- -CGGuGGaCGU----GugGCGCCGGGGcGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 58132 | 0.66 | 0.521897 |
Target: 5'- cGUCGCCcGCGCcguaCGCGGCCgCGUg- -3' miRNA: 3'- -CGGUGGaCGUGug--GCGCCGGgGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 121156 | 0.66 | 0.521897 |
Target: 5'- gGCCGCUggUGCAgACggccguguaCGCGGCCgUGCUg -3' miRNA: 3'- -CGGUGG--ACGUgUG---------GCGCCGGgGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 78122 | 0.66 | 0.512522 |
Target: 5'- cGCCAuCCUGCGgcggGCCGCGggcGCCUCGgaCg -3' miRNA: 3'- -CGGU-GGACGUg---UGGCGC---CGGGGCgaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 107204 | 0.66 | 0.512522 |
Target: 5'- aGCUGCCggagaUGgACcCCGCGGaCCCGCUg -3' miRNA: 3'- -CGGUGG-----ACgUGuGGCGCCgGGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 39913 | 0.66 | 0.512522 |
Target: 5'- cGCCGCgggCUGCuggagcccgACGCCGaggccGCCCCGCUg -3' miRNA: 3'- -CGGUG---GACG---------UGUGGCgc---CGGGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 49156 | 0.66 | 0.512522 |
Target: 5'- gGCUGCCUggaggccuggGCGCGCCGCggGGUgCUGCUg -3' miRNA: 3'- -CGGUGGA----------CGUGUGGCG--CCGgGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 67735 | 0.66 | 0.512522 |
Target: 5'- gGCgCACagGCACggcGCgGCGGCCCCGUc- -3' miRNA: 3'- -CG-GUGgaCGUG---UGgCGCCGGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 83505 | 0.66 | 0.512522 |
Target: 5'- cGCCAgCgggaaGCACACCgucGCGGCCaCCGg-- -3' miRNA: 3'- -CGGUgGa----CGUGUGG---CGCCGG-GGCgag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 132110 | 0.66 | 0.512522 |
Target: 5'- gGCCGgC-GCGCACgaGCGGCaggCCCaGCUCg -3' miRNA: 3'- -CGGUgGaCGUGUGg-CGCCG---GGG-CGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 57103 | 0.66 | 0.512522 |
Target: 5'- cGCCGCgaGCagcgcGCGCCGcCGcGCCCgGCg- -3' miRNA: 3'- -CGGUGgaCG-----UGUGGC-GC-CGGGgCGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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