miRNA display CGI


Results 41 - 60 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 106783 0.66 0.53039
Target:  5'- cGCCuggACCUGgcCGCGgcggcggugcucgUCGgGGCCCCGCUg -3'
miRNA:   3'- -CGG---UGGAC--GUGU-------------GGCgCCGGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 104886 0.66 0.525665
Target:  5'- cGCCugCUGCGCgaggugguggacgcgGCgGCGGCgcgcgaCCGCg- -3'
miRNA:   3'- -CGGugGACGUG---------------UGgCGCCGg-----GGCGag -5'
29370 3' -63.7 NC_006151.1 + 3090 0.66 0.521897
Target:  5'- gGCgGCgaGCAgCGCCGagaGGCCgCCGCg- -3'
miRNA:   3'- -CGgUGgaCGU-GUGGCg--CCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 135611 0.66 0.521897
Target:  5'- aGCC-CUccCACgGCCGCGGCgCCCGCa- -3'
miRNA:   3'- -CGGuGGacGUG-UGGCGCCG-GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 24856 0.66 0.521897
Target:  5'- cCCACCUucaGCAcCACCGUGuccGCCUCGCcCg -3'
miRNA:   3'- cGGUGGA---CGU-GUGGCGC---CGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 38686 0.66 0.521897
Target:  5'- gGCC-CCgGCGCaagcGCCGCucccucggacucGGgCCCGCUCc -3'
miRNA:   3'- -CGGuGGaCGUG----UGGCG------------CCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 44963 0.66 0.521897
Target:  5'- gGCuCGCCUcuCAcCACCGuuGCCCCGCg- -3'
miRNA:   3'- -CG-GUGGAc-GU-GUGGCgcCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 84159 0.66 0.521897
Target:  5'- uGCCAgCUGCGCGacuCgGCGcGCCUC-CUCg -3'
miRNA:   3'- -CGGUgGACGUGU---GgCGC-CGGGGcGAG- -5'
29370 3' -63.7 NC_006151.1 + 112823 0.66 0.521897
Target:  5'- aGCgCGCCUucGC-CACgCGCGuGCUCaCGCUCg -3'
miRNA:   3'- -CG-GUGGA--CGuGUG-GCGC-CGGG-GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 15059 0.66 0.521897
Target:  5'- gGCC-CCgGCGccuuCugCGCGGCCCC-CUg -3'
miRNA:   3'- -CGGuGGaCGU----GugGCGCCGGGGcGAg -5'
29370 3' -63.7 NC_006151.1 + 58132 0.66 0.521897
Target:  5'- cGUCGCCcGCGCcguaCGCGGCCgCGUg- -3'
miRNA:   3'- -CGGUGGaCGUGug--GCGCCGGgGCGag -5'
29370 3' -63.7 NC_006151.1 + 121156 0.66 0.521897
Target:  5'- gGCCGCUggUGCAgACggccguguaCGCGGCCgUGCUg -3'
miRNA:   3'- -CGGUGG--ACGUgUG---------GCGCCGGgGCGAg -5'
29370 3' -63.7 NC_006151.1 + 78122 0.66 0.512522
Target:  5'- cGCCAuCCUGCGgcggGCCGCGggcGCCUCGgaCg -3'
miRNA:   3'- -CGGU-GGACGUg---UGGCGC---CGGGGCgaG- -5'
29370 3' -63.7 NC_006151.1 + 107204 0.66 0.512522
Target:  5'- aGCUGCCggagaUGgACcCCGCGGaCCCGCUg -3'
miRNA:   3'- -CGGUGG-----ACgUGuGGCGCCgGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 39913 0.66 0.512522
Target:  5'- cGCCGCgggCUGCuggagcccgACGCCGaggccGCCCCGCUg -3'
miRNA:   3'- -CGGUG---GACG---------UGUGGCgc---CGGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 49156 0.66 0.512522
Target:  5'- gGCUGCCUggaggccuggGCGCGCCGCggGGUgCUGCUg -3'
miRNA:   3'- -CGGUGGA----------CGUGUGGCG--CCGgGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 67735 0.66 0.512522
Target:  5'- gGCgCACagGCACggcGCgGCGGCCCCGUc- -3'
miRNA:   3'- -CG-GUGgaCGUG---UGgCGCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 83505 0.66 0.512522
Target:  5'- cGCCAgCgggaaGCACACCgucGCGGCCaCCGg-- -3'
miRNA:   3'- -CGGUgGa----CGUGUGG---CGCCGG-GGCgag -5'
29370 3' -63.7 NC_006151.1 + 132110 0.66 0.512522
Target:  5'- gGCCGgC-GCGCACgaGCGGCaggCCCaGCUCg -3'
miRNA:   3'- -CGGUgGaCGUGUGg-CGCCG---GGG-CGAG- -5'
29370 3' -63.7 NC_006151.1 + 57103 0.66 0.512522
Target:  5'- cGCCGCgaGCagcgcGCGCCGcCGcGCCCgGCg- -3'
miRNA:   3'- -CGGUGgaCG-----UGUGGC-GC-CGGGgCGag -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.