miRNA display CGI


Results 41 - 60 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 119540 0.74 0.184153
Target:  5'- cCCGCCUGCgcgcacacaacccuGCACCGCcugcGCCaCCGCUCc -3'
miRNA:   3'- cGGUGGACG--------------UGUGGCGc---CGG-GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 64309 0.74 0.185486
Target:  5'- uGCCGCa-GCGCGCCGUgcuGGCCUCGCa- -3'
miRNA:   3'- -CGGUGgaCGUGUGGCG---CCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 24959 0.74 0.185486
Target:  5'- cGUgACgaUGCGCGCCGCGGCCugCCGCgUCa -3'
miRNA:   3'- -CGgUGg-ACGUGUGGCGCCGG--GGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 120870 0.74 0.185486
Target:  5'- aGCCACCUGCuccGCuCCGUcauGGCCUCGCg- -3'
miRNA:   3'- -CGGUGGACG---UGuGGCG---CCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 131550 0.74 0.18999
Target:  5'- -gCGCCUcGgGCGCCGCacgGGCCCCGCgUCg -3'
miRNA:   3'- cgGUGGA-CgUGUGGCG---CCGGGGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 121835 0.73 0.19459
Target:  5'- cGCUACCU-CGCGCgGCGGCUgCCGCUg -3'
miRNA:   3'- -CGGUGGAcGUGUGgCGCCGG-GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 39775 0.73 0.19459
Target:  5'- cGCCGCCUucggGCAC-CgCGCGGCCaaCCGCUg -3'
miRNA:   3'- -CGGUGGA----CGUGuG-GCGCCGG--GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 30562 0.73 0.199286
Target:  5'- cGCCGCaC-GCGCcgucCCGCGGCCCCGUc- -3'
miRNA:   3'- -CGGUG-GaCGUGu---GGCGCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 99300 0.73 0.199286
Target:  5'- aGCgCGCCgUGCugGaCCGCGcGCCCCGCc- -3'
miRNA:   3'- -CG-GUGG-ACGugU-GGCGC-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 38174 0.73 0.204081
Target:  5'- cGUCGCC--CGCACCGUGGCgCCGCUg -3'
miRNA:   3'- -CGGUGGacGUGUGGCGCCGgGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 70573 0.73 0.208976
Target:  5'- cGCCGCCacGCGCACCaCGGCCgagcggCUGCUCc -3'
miRNA:   3'- -CGGUGGa-CGUGUGGcGCCGG------GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 107529 0.73 0.208976
Target:  5'- cCCGCC-GUugGCCccgGCGGCCCCGC-Cg -3'
miRNA:   3'- cGGUGGaCGugUGG---CGCCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 99677 0.73 0.208976
Target:  5'- cGCUgggGCCUGCGCGCCGaCGGCgCCGg-- -3'
miRNA:   3'- -CGG---UGGACGUGUGGC-GCCGgGGCgag -5'
29370 3' -63.7 NC_006151.1 + 58787 0.73 0.210962
Target:  5'- cGCCGCCgucacguggacgaaGCGCGCCGCguacgcgccGGCCCCGUc- -3'
miRNA:   3'- -CGGUGGa-------------CGUGUGGCG---------CCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 76893 0.73 0.213468
Target:  5'- cGCCGCCUGCuGCGCCggcgagaGCGGCaUCCGgUCc -3'
miRNA:   3'- -CGGUGGACG-UGUGG-------CGCCG-GGGCgAG- -5'
29370 3' -63.7 NC_006151.1 + 39339 0.73 0.21907
Target:  5'- cGCgGCUcgGCGCGgCGCGGCgCCgGCUCa -3'
miRNA:   3'- -CGgUGGa-CGUGUgGCGCCG-GGgCGAG- -5'
29370 3' -63.7 NC_006151.1 + 68397 0.72 0.223747
Target:  5'- gGCCACCUccauggcGCGCGcCCGCcccccucGCCCCGCUa -3'
miRNA:   3'- -CGGUGGA-------CGUGU-GGCGc------CGGGGCGAg -5'
29370 3' -63.7 NC_006151.1 + 67988 0.72 0.224271
Target:  5'- gGCgGCCcGCcgGCGCCGCGGCCacggGCUCg -3'
miRNA:   3'- -CGgUGGaCG--UGUGGCGCCGGgg--CGAG- -5'
29370 3' -63.7 NC_006151.1 + 107618 0.72 0.224271
Target:  5'- cGCCGCCcGCcaaGC-CCGUGGagacgaCCCCGCUCa -3'
miRNA:   3'- -CGGUGGaCG---UGuGGCGCC------GGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 118722 0.72 0.224271
Target:  5'- uGCCGCCUGCuGCACgGCuacgugcugGGCCCgGCg- -3'
miRNA:   3'- -CGGUGGACG-UGUGgCG---------CCGGGgCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.