miRNA display CGI


Results 41 - 60 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 129665 0.74 0.180641
Target:  5'- cGCCGCCUcguacacGCGCACCGUccGGCCgCCGUg- -3'
miRNA:   3'- -CGGUGGA-------CGUGUGGCG--CCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 129032 0.68 0.42239
Target:  5'- gGCCGCgCgcgcGUACACCucgcgguGCGGCUCCGC-Cg -3'
miRNA:   3'- -CGGUG-Ga---CGUGUGG-------CGCCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 128795 0.69 0.351372
Target:  5'- gGUCGCCUcggcgagcgcgGCGCG-CGUGGCCCCGUa- -3'
miRNA:   3'- -CGGUGGA-----------CGUGUgGCGCCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 128112 0.67 0.456997
Target:  5'- cGUCGCCaGCACGcgcgcgaagcgcuCCGUGGgCCCGC-Cg -3'
miRNA:   3'- -CGGUGGaCGUGU-------------GGCGCCgGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 127468 0.67 0.474861
Target:  5'- -gCGCUgggcgGCGCggaacgaGCCGCGGaCCCCGCg- -3'
miRNA:   3'- cgGUGGa----CGUG-------UGGCGCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 125451 0.71 0.295121
Target:  5'- -gCGCCUGaaccccaGCGCCGUGGCCacggccgCGCUCg -3'
miRNA:   3'- cgGUGGACg------UGUGGCGCCGGg------GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 125196 0.67 0.475764
Target:  5'- cGCCGgCgucgUGgGCcCCGCGGcCCCCGCg- -3'
miRNA:   3'- -CGGUgG----ACgUGuGGCGCC-GGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 123916 0.66 0.540839
Target:  5'- gGCgGCCgugacGCGgGCCGCcucGGCCUCGC-Cg -3'
miRNA:   3'- -CGgUGGa----CGUgUGGCG---CCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 123879 0.79 0.077508
Target:  5'- uGCUGCUgGCGCucGCCGCGGCCCCGC-Cg -3'
miRNA:   3'- -CGGUGGaCGUG--UGGCGCCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 123225 0.67 0.483923
Target:  5'- gGCCGCCggguuccGCGCACgGCgcgcguucugcgaGGCCgCCGCg- -3'
miRNA:   3'- -CGGUGGa------CGUGUGgCG-------------CCGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 123030 0.68 0.405688
Target:  5'- cGCCguggcgugggcggACCUGCcgGCCGCGGCgCUGCg- -3'
miRNA:   3'- -CGG-------------UGGACGugUGGCGCCGgGGCGag -5'
29370 3' -63.7 NC_006151.1 + 122777 0.68 0.423236
Target:  5'- gGCUGCUcguggGCgGCugCGCGGCCUCGCcCg -3'
miRNA:   3'- -CGGUGGa----CG-UGugGCGCCGGGGCGaG- -5'
29370 3' -63.7 NC_006151.1 + 122672 0.7 0.32942
Target:  5'- cGCCgcGCCgaggUGCGCGCgGCGGCCguggaGCUCg -3'
miRNA:   3'- -CGG--UGG----ACGUGUGgCGCCGGgg---CGAG- -5'
29370 3' -63.7 NC_006151.1 + 122416 0.69 0.382222
Target:  5'- cGCCGCCgUGgACGCCGCcgaGGCCCgGg-- -3'
miRNA:   3'- -CGGUGG-ACgUGUGGCG---CCGGGgCgag -5'
29370 3' -63.7 NC_006151.1 + 121875 0.72 0.240507
Target:  5'- cGCCGCUcacgUGCGCGCUGC-GCCUggCGCUCg -3'
miRNA:   3'- -CGGUGG----ACGUGUGGCGcCGGG--GCGAG- -5'
29370 3' -63.7 NC_006151.1 + 121835 0.73 0.19459
Target:  5'- cGCUACCU-CGCGCgGCGGCUgCCGCUg -3'
miRNA:   3'- -CGGUGGAcGUGUGgCGCCGG-GGCGAg -5'
29370 3' -63.7 NC_006151.1 + 121156 0.66 0.521897
Target:  5'- gGCCGCUggUGCAgACggccguguaCGCGGCCgUGCUg -3'
miRNA:   3'- -CGGUGG--ACGUgUG---------GCGCCGGgGCGAg -5'
29370 3' -63.7 NC_006151.1 + 120870 0.74 0.185486
Target:  5'- aGCCACCUGCuccGCuCCGUcauGGCCUCGCg- -3'
miRNA:   3'- -CGGUGGACG---UGuGGCG---CCGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 120325 0.67 0.493987
Target:  5'- aGCCuCUcGgACGCCGCGcGCgCCCGCg- -3'
miRNA:   3'- -CGGuGGaCgUGUGGCGC-CG-GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 120173 0.68 0.423236
Target:  5'- cGCuCGCCgacgGCAUCGUGGCCCCGgaCc -3'
miRNA:   3'- -CG-GUGGacg-UGUGGCGCCGGGGCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.