miRNA display CGI


Results 21 - 40 of 366 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 3' -63.7 NC_006151.1 + 135801 0.66 0.531337
Target:  5'- uGCCggGCgaGCGCGCCGaGGCCgaGCUUu -3'
miRNA:   3'- -CGG--UGgaCGUGUGGCgCCGGggCGAG- -5'
29370 3' -63.7 NC_006151.1 + 135611 0.66 0.521897
Target:  5'- aGCC-CUccCACgGCCGCGGCgCCCGCa- -3'
miRNA:   3'- -CGGuGGacGUG-UGGCGCCG-GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 135338 0.74 0.17676
Target:  5'- cGCCGCCagGCACGuguCCGCGaGCCgCCGCg- -3'
miRNA:   3'- -CGGUGGa-CGUGU---GGCGC-CGG-GGCGag -5'
29370 3' -63.7 NC_006151.1 + 135182 0.72 0.246133
Target:  5'- cGCCGgCUGC-CGCCGCcgGGCCagucccagcguCCGCUCc -3'
miRNA:   3'- -CGGUgGACGuGUGGCG--CCGG-----------GGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 134833 0.72 0.234989
Target:  5'- gGCgACCgcgcgcGCACACaCGCgGGgCCCGCUCu -3'
miRNA:   3'- -CGgUGGa-----CGUGUG-GCG-CCgGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 134792 0.68 0.431751
Target:  5'- gGCCugUgagGC-CGCgGCGGCCCgCGC-Cg -3'
miRNA:   3'- -CGGugGa--CGuGUGgCGCCGGG-GCGaG- -5'
29370 3' -63.7 NC_006151.1 + 134690 0.71 0.2822
Target:  5'- cGCCACCccGCGCGCCcCGaugcagcaccGCCCCGCg- -3'
miRNA:   3'- -CGGUGGa-CGUGUGGcGC----------CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 134294 0.66 0.511588
Target:  5'- cCCACgggcgcaauuuuaUUGCACGCCGCuGcGCCUCGCg- -3'
miRNA:   3'- cGGUG-------------GACGUGUGGCG-C-CGGGGCGag -5'
29370 3' -63.7 NC_006151.1 + 132319 0.69 0.390211
Target:  5'- cGCCACgagagCUcGCGCGCCGUGGCCaCGUa- -3'
miRNA:   3'- -CGGUG-----GA-CGUGUGGCGCCGGgGCGag -5'
29370 3' -63.7 NC_006151.1 + 132110 0.66 0.512522
Target:  5'- gGCCGgC-GCGCACgaGCGGCaggCCCaGCUCg -3'
miRNA:   3'- -CGGUgGaCGUGUGg-CGCCG---GGG-CGAG- -5'
29370 3' -63.7 NC_006151.1 + 131790 0.66 0.531337
Target:  5'- cGCCGCCgucgucaGCGCGCCauccuccuCGGCCUCgGCUa -3'
miRNA:   3'- -CGGUGGa------CGUGUGGc-------GCCGGGG-CGAg -5'
29370 3' -63.7 NC_006151.1 + 131550 0.74 0.18999
Target:  5'- -gCGCCUcGgGCGCCGCacgGGCCCCGCgUCg -3'
miRNA:   3'- cgGUGGA-CgUGUGGCG---CCGGGGCG-AG- -5'
29370 3' -63.7 NC_006151.1 + 131337 0.66 0.540839
Target:  5'- cUCACCccCGCGCCG-GcCCCCGCUCg -3'
miRNA:   3'- cGGUGGacGUGUGGCgCcGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 131118 0.72 0.240507
Target:  5'- gGCCGCg-GCGCgggagGCCGCGGCgCCGCg- -3'
miRNA:   3'- -CGGUGgaCGUG-----UGGCGCCGgGGCGag -5'
29370 3' -63.7 NC_006151.1 + 130799 0.66 0.531337
Target:  5'- uCCAgCUggcGUACGCgGCguccgGGUCCCGCUCg -3'
miRNA:   3'- cGGUgGA---CGUGUGgCG-----CCGGGGCGAG- -5'
29370 3' -63.7 NC_006151.1 + 130642 0.69 0.358157
Target:  5'- cGCCGCCgagGC-CGCCuGCGGCgugaacgucagugCCCGCg- -3'
miRNA:   3'- -CGGUGGa--CGuGUGG-CGCCG-------------GGGCGag -5'
29370 3' -63.7 NC_006151.1 + 130369 0.69 0.374342
Target:  5'- gGCCGC--GCGCGCCGCGGCgUCCaGCg- -3'
miRNA:   3'- -CGGUGgaCGUGUGGCGCCG-GGG-CGag -5'
29370 3' -63.7 NC_006151.1 + 130324 0.69 0.390211
Target:  5'- cGCCGCgcgcucggggagCUcGCGCGCCGCGGCgUCGUg- -3'
miRNA:   3'- -CGGUG------------GA-CGUGUGGCGCCGgGGCGag -5'
29370 3' -63.7 NC_006151.1 + 130245 0.67 0.503217
Target:  5'- aGCCGCagaagGCGCggaagaggccgGCgCGCGGCCCCGa-- -3'
miRNA:   3'- -CGGUGga---CGUG-----------UG-GCGCCGGGGCgag -5'
29370 3' -63.7 NC_006151.1 + 129883 0.68 0.423236
Target:  5'- cGCCGCC-GC-CACCuCGGUCgCGUUCa -3'
miRNA:   3'- -CGGUGGaCGuGUGGcGCCGGgGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.