Results 41 - 60 of 366 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29370 | 3' | -63.7 | NC_006151.1 | + | 57528 | 0.66 | 0.560006 |
Target: 5'- gGCCGCCUccgGCGCgGCCGCGGgCacguCGC-Cg -3' miRNA: 3'- -CGGUGGA---CGUG-UGGCGCCgGg---GCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 84518 | 0.66 | 0.560006 |
Target: 5'- cGCCACUU---CAUCGCGcCCCCGUUCc -3' miRNA: 3'- -CGGUGGAcguGUGGCGCcGGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 104595 | 0.66 | 0.560006 |
Target: 5'- gGCCGgCgGCA-GCCGCGGCgCCGagaUCu -3' miRNA: 3'- -CGGUgGaCGUgUGGCGCCGgGGCg--AG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 31022 | 0.66 | 0.560006 |
Target: 5'- cGCCGCCgcgGC-CcUCGCGGCCCgGg-- -3' miRNA: 3'- -CGGUGGa--CGuGuGGCGCCGGGgCgag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 37975 | 0.66 | 0.560006 |
Target: 5'- -aCGCCUGCGuccuggccUGCCGCGGCguccucgagcgCCUGCUg -3' miRNA: 3'- cgGUGGACGU--------GUGGCGCCG-----------GGGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 105257 | 0.66 | 0.549439 |
Target: 5'- cGCCugggacgagGCCUgggaggacuuuggGCGCGCgCGCGGCCgCGC-Cg -3' miRNA: 3'- -CGG---------UGGA-------------CGUGUG-GCGCCGGgGCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 48715 | 0.66 | 0.546567 |
Target: 5'- cGCCGCCcggcccgcgaaggGCACGcCCGCGGCgUCgGCg- -3' miRNA: 3'- -CGGUGGa------------CGUGU-GGCGCCG-GGgCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 73496 | 0.66 | 0.535131 |
Target: 5'- cGCCACCUGCAUcugGCCcauaaaguacgacucGCuGGCCuucuCCGCa- -3' miRNA: 3'- -CGGUGGACGUG---UGG---------------CG-CCGG----GGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 16017 | 0.66 | 0.537982 |
Target: 5'- cCCcUCUGUugugcccucaauaaACACgGCGGCCcgCCGCUCg -3' miRNA: 3'- cGGuGGACG--------------UGUGgCGCCGG--GGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 131337 | 0.66 | 0.540839 |
Target: 5'- cUCACCccCGCGCCG-GcCCCCGCUCg -3' miRNA: 3'- cGGUGGacGUGUGGCgCcGGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 38849 | 0.66 | 0.540839 |
Target: 5'- gGCCGgCgagacccaCACGCCGCGGCCCUccgagGCg- -3' miRNA: 3'- -CGGUgGac------GUGUGGCGCCGGGG-----CGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 45846 | 0.66 | 0.540839 |
Target: 5'- uCUGCCUGgACGUCGCGGCCaCCGaggCg -3' miRNA: 3'- cGGUGGACgUGUGGCGCCGG-GGCga-G- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 75820 | 0.66 | 0.540839 |
Target: 5'- aGCCGCUgGCGCACgC-CGGCCgUGgUCa -3' miRNA: 3'- -CGGUGGaCGUGUG-GcGCCGGgGCgAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 117544 | 0.66 | 0.540839 |
Target: 5'- cCCACgCgGCgacGCGCCGCGGCCagaaggGCUCc -3' miRNA: 3'- cGGUG-GaCG---UGUGGCGCCGGgg----CGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 15349 | 0.66 | 0.540839 |
Target: 5'- cCCGCC-GguCAUCGaGGgCCCGCUCu -3' miRNA: 3'- cGGUGGaCguGUGGCgCCgGGGCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 52366 | 0.66 | 0.540839 |
Target: 5'- uCCGCCgGCGCGCCcccgGGgCCCGCg- -3' miRNA: 3'- cGGUGGaCGUGUGGcg--CCgGGGCGag -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 56627 | 0.66 | 0.540839 |
Target: 5'- cGCC-CCUGCGCacgcccgagaugGCCGaGGCCguguaCCGCUg -3' miRNA: 3'- -CGGuGGACGUG------------UGGCgCCGG-----GGCGAg -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 123916 | 0.66 | 0.540839 |
Target: 5'- gGCgGCCgugacGCGgGCCGCcucGGCCUCGC-Cg -3' miRNA: 3'- -CGgUGGa----CGUgUGGCG---CCGGGGCGaG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 38070 | 0.66 | 0.540839 |
Target: 5'- cCCGCCUGCcucgaggaggugACgGCCGCGcuGCUCgCGCUCc -3' miRNA: 3'- cGGUGGACG------------UG-UGGCGC--CGGG-GCGAG- -5' |
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29370 | 3' | -63.7 | NC_006151.1 | + | 104083 | 0.66 | 0.540839 |
Target: 5'- cGCCgcGCCgagcaGCACGCCuucgacGCGGCCgaGUUCg -3' miRNA: 3'- -CGG--UGGa----CGUGUGG------CGCCGGggCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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