miRNA display CGI


Results 61 - 80 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29370 5' -55 NC_006151.1 + 135010 0.72 0.641992
Target:  5'- ---cGGGGGcGCGG-GGgGGCAGCAGCg -3'
miRNA:   3'- aguaCCUCC-UGUCgCCgUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 54632 0.71 0.652422
Target:  5'- cCcgGGGGGA-AGCGGCGGC-GCgAGCg -3'
miRNA:   3'- aGuaCCUCCUgUCGCCGUUGuCG-UCG- -5'
29370 5' -55 NC_006151.1 + 61260 0.71 0.652422
Target:  5'- ----cGAGGAC-GCGGCGGCAgGCGGUa -3'
miRNA:   3'- aguacCUCCUGuCGCCGUUGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 20132 0.71 0.652422
Target:  5'- --cUGGGGGGCgGGCGccGCGGgGGCGGCg -3'
miRNA:   3'- aguACCUCCUG-UCGC--CGUUgUCGUCG- -5'
29370 5' -55 NC_006151.1 + 133370 0.71 0.652422
Target:  5'- -gGUGGuGGugGugGCGGCcggGGCGGCGGCc -3'
miRNA:   3'- agUACCuCCugU--CGCCG---UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 96046 0.71 0.662836
Target:  5'- ---aGGGGGuuCAGCaGGUAGCAGCuGGCg -3'
miRNA:   3'- aguaCCUCCu-GUCG-CCGUUGUCG-UCG- -5'
29370 5' -55 NC_006151.1 + 128386 0.71 0.662836
Target:  5'- gUCAc-GAGGuccACGGCGGCcacGACGGCGGCc -3'
miRNA:   3'- -AGUacCUCC---UGUCGCCG---UUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 128258 0.71 0.662836
Target:  5'- -gGUGGuGGA-AGCGGCAcugcGCGcGCAGCg -3'
miRNA:   3'- agUACCuCCUgUCGCCGU----UGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 89265 0.71 0.673223
Target:  5'- gUCGUGGucGACGgcgccGCGGCGAUGGCcGCc -3'
miRNA:   3'- -AGUACCucCUGU-----CGCCGUUGUCGuCG- -5'
29370 5' -55 NC_006151.1 + 74491 0.71 0.673223
Target:  5'- -gAUGGGGucgcagucccaGAUgAGCGGgGGCAGCAGCg -3'
miRNA:   3'- agUACCUC-----------CUG-UCGCCgUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 104006 0.71 0.673223
Target:  5'- cCGUGGAGGcGCGccgcGCGGCGgagguggagcGCGcGCAGCg -3'
miRNA:   3'- aGUACCUCC-UGU----CGCCGU----------UGU-CGUCG- -5'
29370 5' -55 NC_006151.1 + 134819 0.71 0.693885
Target:  5'- ---cGGAcccGGACGGUGGCGACcGCGcGCg -3'
miRNA:   3'- aguaCCU---CCUGUCGCCGUUGuCGU-CG- -5'
29370 5' -55 NC_006151.1 + 2578 0.7 0.701069
Target:  5'- -gGUGGGGaGCacgcgcuggcgguaGGCGcGCGGCGGCAGCg -3'
miRNA:   3'- agUACCUCcUG--------------UCGC-CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 69966 0.7 0.703117
Target:  5'- cCcgGGgccgcgcGGGcgcuGCAGCGGCGGCAGCgucAGCa -3'
miRNA:   3'- aGuaCC-------UCC----UGUCGCCGUUGUCG---UCG- -5'
29370 5' -55 NC_006151.1 + 30335 0.7 0.70414
Target:  5'- ---aGGAGG-CGGCGGCGGC-GCgagGGCg -3'
miRNA:   3'- aguaCCUCCuGUCGCCGUUGuCG---UCG- -5'
29370 5' -55 NC_006151.1 + 118880 0.7 0.70414
Target:  5'- ---cGGcGGcGCGGCGGCGAC-GCGGCc -3'
miRNA:   3'- aguaCCuCC-UGUCGCCGUUGuCGUCG- -5'
29370 5' -55 NC_006151.1 + 137905 0.7 0.70414
Target:  5'- cCAaGGucGACGGCGGCGGCuGCcacgGGCg -3'
miRNA:   3'- aGUaCCucCUGUCGCCGUUGuCG----UCG- -5'
29370 5' -55 NC_006151.1 + 10198 0.7 0.70414
Target:  5'- gUCGcGGcgcGGGCGGCGGCuGCAgagGCGGCu -3'
miRNA:   3'- -AGUaCCu--CCUGUCGCCGuUGU---CGUCG- -5'
29370 5' -55 NC_006151.1 + 97488 0.7 0.70414
Target:  5'- aCGUGGAcGcGCAGCGccucGCGGCGGUGGCg -3'
miRNA:   3'- aGUACCU-CcUGUCGC----CGUUGUCGUCG- -5'
29370 5' -55 NC_006151.1 + 122960 0.7 0.714331
Target:  5'- ---cGGGGGGCGcggacGcCGGCGACGGgGGCg -3'
miRNA:   3'- aguaCCUCCUGU-----C-GCCGUUGUCgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.