miRNA display CGI


Results 41 - 60 of 363 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29371 3' -62.9 NC_006151.1 + 129870 0.73 0.255992
Target:  5'- cCGUGGCGucGCGcGC-CGCCGCCACc- -3'
miRNA:   3'- -GCGCCGCu-CGCaCGaGCGGCGGUGcc -5'
29371 3' -62.9 NC_006151.1 + 129502 0.73 0.244606
Target:  5'- gCGCGGgcgcgaugaCGAGCc-GCUUGCCGCCgACGGg -3'
miRNA:   3'- -GCGCC---------GCUCGcaCGAGCGGCGG-UGCC- -5'
29371 3' -62.9 NC_006151.1 + 128809 0.66 0.610656
Target:  5'- gCGCGGCGcGCGUGg-CcCCGUaCGCGGc -3'
miRNA:   3'- -GCGCCGCuCGCACgaGcGGCG-GUGCC- -5'
29371 3' -62.9 NC_006151.1 + 128267 0.66 0.591328
Target:  5'- aGCGGCacuGCGcGCgcagCGCCGCgCGCaGGu -3'
miRNA:   3'- gCGCCGcu-CGCaCGa---GCGGCG-GUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 128189 0.72 0.280063
Target:  5'- --aGGCGAGCGUGCcgCGCU-CCAUGGc -3'
miRNA:   3'- gcgCCGCUCGCACGa-GCGGcGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 127990 0.69 0.426925
Target:  5'- uGCGGCG-GCuccGCgUCGCgGUCGCGGg -3'
miRNA:   3'- gCGCCGCuCGca-CG-AGCGgCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 127842 0.66 0.629072
Target:  5'- gGCGGCGucGCG-GCUgcgccggagggggCGCCGCC-CGc -3'
miRNA:   3'- gCGCCGCu-CGCaCGA-------------GCGGCGGuGCc -5'
29371 3' -62.9 NC_006151.1 + 127455 0.66 0.591328
Target:  5'- gGCGGCGcacgaAGCGcuggGCggCGCggaacgaGCCGCGGa -3'
miRNA:   3'- gCGCCGC-----UCGCa---CGa-GCGg------CGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 127330 0.67 0.556838
Target:  5'- cCGCgGGCGGGgGUGCUgGUacacguggucggucuCGCCcuggGCGGg -3'
miRNA:   3'- -GCG-CCGCUCgCACGAgCG---------------GCGG----UGCC- -5'
29371 3' -62.9 NC_006151.1 + 126034 0.71 0.35541
Target:  5'- -uCGGCGA-CGUGggCGCCGCCGuCGGc -3'
miRNA:   3'- gcGCCGCUcGCACgaGCGGCGGU-GCC- -5'
29371 3' -62.9 NC_006151.1 + 125877 0.71 0.362928
Target:  5'- aCGC-GCGAG-GaGCUCGCCGaCACGGg -3'
miRNA:   3'- -GCGcCGCUCgCaCGAGCGGCgGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 125588 0.68 0.496239
Target:  5'- -cCGGCGAGCGcggcacgUGCUacaGCCGcCCGCuGGu -3'
miRNA:   3'- gcGCCGCUCGC-------ACGAg--CGGC-GGUG-CC- -5'
29371 3' -62.9 NC_006151.1 + 124849 0.68 0.515522
Target:  5'- aCGCGGCGcGUGUGCa-GCCugGCCAagUGGc -3'
miRNA:   3'- -GCGCCGCuCGCACGagCGG--CGGU--GCC- -5'
29371 3' -62.9 NC_006151.1 + 124067 0.72 0.292758
Target:  5'- gCGCGGaCGGcCGUGCgCGCgGCCGCGa -3'
miRNA:   3'- -GCGCC-GCUcGCACGaGCGgCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 123912 0.7 0.386135
Target:  5'- gCGCGGCGGcCGUgacGCggGCCGCCuCGGc -3'
miRNA:   3'- -GCGCCGCUcGCA---CGagCGGCGGuGCC- -5'
29371 3' -62.9 NC_006151.1 + 123853 0.67 0.553038
Target:  5'- gCGgGGCGccgucgcgcuAGCGcUGCUgcugcuggCGCuCGCCGCGGc -3'
miRNA:   3'- -GCgCCGC----------UCGC-ACGA--------GCG-GCGGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 123243 0.66 0.600982
Target:  5'- -aCGGCGcGCGUucuGCgagGCCGCCGCGc -3'
miRNA:   3'- gcGCCGCuCGCA---CGag-CGGCGGUGCc -5'
29371 3' -62.9 NC_006151.1 + 123120 0.68 0.479077
Target:  5'- gGCGGCGAGCcuggcgcaGUGCgugCGCgaGCaGCGGc -3'
miRNA:   3'- gCGCCGCUCG--------CACGa--GCGg-CGgUGCC- -5'
29371 3' -62.9 NC_006151.1 + 123032 0.67 0.572107
Target:  5'- cCGUGGCGugGGCGgaccUGCCGgCCGCGGc -3'
miRNA:   3'- -GCGCCGC--UCGCacgaGCGGC-GGUGCC- -5'
29371 3' -62.9 NC_006151.1 + 122957 0.72 0.280063
Target:  5'- cCGCGGgGGGCGcGgaCGCCGgCgACGGg -3'
miRNA:   3'- -GCGCCgCUCGCaCgaGCGGC-GgUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.