miRNA display CGI


Results 1 - 20 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 99268 0.66 0.748461
Target:  5'- gGGCuucaCGCGCCGccacugcgaccuccUCgaGCGCGCcGUGCUGg -3'
miRNA:   3'- -CCGc---GUGCGGC--------------AG--UGCGCG-CACGACg -5'
29372 3' -60 NC_006151.1 + 121046 0.66 0.751268
Target:  5'- uGUGCugGCCuGcC-CGCGCGUGg-GCu -3'
miRNA:   3'- cCGCGugCGG-CaGuGCGCGCACgaCG- -5'
29372 3' -60 NC_006151.1 + 112218 0.66 0.751268
Target:  5'- gGGCGCAgucgcgcuCGCuCGUCGC-CGCcgccaggcGCUGCg -3'
miRNA:   3'- -CCGCGU--------GCG-GCAGUGcGCGca------CGACG- -5'
29372 3' -60 NC_006151.1 + 110962 0.66 0.751268
Target:  5'- cGGCGgGCGUCcucCACGauCGCGUGC-GCc -3'
miRNA:   3'- -CCGCgUGCGGca-GUGC--GCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 105285 0.66 0.751268
Target:  5'- gGGCGCGCGCgCGgcCGCGC-CG-GC-GCc -3'
miRNA:   3'- -CCGCGUGCG-GCa-GUGCGcGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 75277 0.66 0.751268
Target:  5'- uGGCGCAgCGCCGcCA-GCGUG-GCg-- -3'
miRNA:   3'- -CCGCGU-GCGGCaGUgCGCGCaCGacg -5'
29372 3' -60 NC_006151.1 + 63249 0.66 0.751268
Target:  5'- aGGUcaGCACcucgccggaGCuCGUCACGaCGCG-GUUGCu -3'
miRNA:   3'- -CCG--CGUG---------CG-GCAGUGC-GCGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 4864 0.66 0.751268
Target:  5'- cGGCGC-CGCCGUaGCGgaCGCG-GCcGUc -3'
miRNA:   3'- -CCGCGuGCGGCAgUGC--GCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 31643 0.66 0.751268
Target:  5'- aGCGCACGCgGgCGCGCGgGgagGgaGg -3'
miRNA:   3'- cCGCGUGCGgCaGUGCGCgCa--CgaCg -5'
29372 3' -60 NC_006151.1 + 141610 0.66 0.751268
Target:  5'- cGGCGagGCuGCCGggaUCGgGCGgGUcGCUGCc -3'
miRNA:   3'- -CCGCg-UG-CGGC---AGUgCGCgCA-CGACG- -5'
29372 3' -60 NC_006151.1 + 11693 0.66 0.751268
Target:  5'- cGGgGC-CGCgGg-ACgGCGCGUGCgGCg -3'
miRNA:   3'- -CCgCGuGCGgCagUG-CGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 88380 0.66 0.751268
Target:  5'- cGGCGCGaGCgCGUC-CGCGgCGUccGCgGCc -3'
miRNA:   3'- -CCGCGUgCG-GCAGuGCGC-GCA--CGaCG- -5'
29372 3' -60 NC_006151.1 + 24446 0.66 0.769745
Target:  5'- uGGUGUcguaGCgGUCGCGCGCGaGCa-- -3'
miRNA:   3'- -CCGCGug--CGgCAGUGCGCGCaCGacg -5'
29372 3' -60 NC_006151.1 + 97182 0.66 0.764247
Target:  5'- cGGCGCACgacgcgcucgacgguGCCGagGCGCaCGUagGCgGCg -3'
miRNA:   3'- -CCGCGUG---------------CGGCagUGCGcGCA--CGaCG- -5'
29372 3' -60 NC_006151.1 + 123691 0.66 0.76056
Target:  5'- cGCGCGgaucgcuuCGCCGg-ACGCGaCGgGCUGUa -3'
miRNA:   3'- cCGCGU--------GCGGCagUGCGC-GCaCGACG- -5'
29372 3' -60 NC_006151.1 + 120339 0.66 0.76056
Target:  5'- cGCGCGCGCC----CGCGUGgccggGCUcGCg -3'
miRNA:   3'- cCGCGUGCGGcaguGCGCGCa----CGA-CG- -5'
29372 3' -60 NC_006151.1 + 114157 0.66 0.76056
Target:  5'- gGGCGCAgCGaCCG-CGCGgCccuCGUGCUGg -3'
miRNA:   3'- -CCGCGU-GC-GGCaGUGC-Gc--GCACGACg -5'
29372 3' -60 NC_006151.1 + 45441 0.66 0.76056
Target:  5'- cGCGgGCGUCG-CACGCaccGCGggGCgGCg -3'
miRNA:   3'- cCGCgUGCGGCaGUGCG---CGCa-CGaCG- -5'
29372 3' -60 NC_006151.1 + 115548 0.66 0.759635
Target:  5'- cGCGCACGgCGUacucgccCGCGgGCGggcGCgcggGCa -3'
miRNA:   3'- cCGCGUGCgGCA-------GUGCgCGCa--CGa---CG- -5'
29372 3' -60 NC_006151.1 + 89637 0.66 0.759635
Target:  5'- uGUGCGCGCCcuugacgGcCACcgagaggugGCGCGUGCUcggGCg -3'
miRNA:   3'- cCGCGUGCGG-------CaGUG---------CGCGCACGA---CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.