miRNA display CGI


Results 1 - 20 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 138004 1.14 0.0006
Target:  5'- cGGCGCACGCCGUCACGCGCGUGCUGCa -3'
miRNA:   3'- -CCGCGUGCGGCAGUGCGCGCACGACG- -5'
29372 3' -60 NC_006151.1 + 119998 0.87 0.041855
Target:  5'- cGGCGCACGCUG-CugGCG-GUGCUGCa -3'
miRNA:   3'- -CCGCGUGCGGCaGugCGCgCACGACG- -5'
29372 3' -60 NC_006151.1 + 78430 0.86 0.050338
Target:  5'- uGGCcCACGCCGUCAacCGCGUGCUGCg -3'
miRNA:   3'- -CCGcGUGCGGCAGUgcGCGCACGACG- -5'
29372 3' -60 NC_006151.1 + 121863 0.86 0.051679
Target:  5'- aGGCGCagacgACGCCGcUCACGUGCGcGCUGCg -3'
miRNA:   3'- -CCGCG-----UGCGGC-AGUGCGCGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 123850 0.84 0.06892
Target:  5'- uGCGCgggGCGCCGUCGCGCuaGCGcUGCUGCu -3'
miRNA:   3'- cCGCG---UGCGGCAGUGCG--CGC-ACGACG- -5'
29372 3' -60 NC_006151.1 + 115116 0.84 0.072601
Target:  5'- cGGCGC-CGCCGgcgaCGCGCGCGUGC-GCc -3'
miRNA:   3'- -CCGCGuGCGGCa---GUGCGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 117366 0.84 0.076273
Target:  5'- uGGCGCACGCCGUacacgugcacggcCACGCGCuUGCcGCa -3'
miRNA:   3'- -CCGCGUGCGGCA-------------GUGCGCGcACGaCG- -5'
29372 3' -60 NC_006151.1 + 52034 0.83 0.080538
Target:  5'- cGGCGaaggccgGCGCCGUCGCGUGCGUGUaGCc -3'
miRNA:   3'- -CCGCg------UGCGGCAGUGCGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 136434 0.83 0.086803
Target:  5'- cGGCGCACGCCG-CGCGCuacgucgacgagcGCGUGC-GCg -3'
miRNA:   3'- -CCGCGUGCGGCaGUGCG-------------CGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 138102 0.83 0.087028
Target:  5'- cGGCGCACGCCG-CugGCGgacaUGCUGCg -3'
miRNA:   3'- -CCGCGUGCGGCaGugCGCgc--ACGACG- -5'
29372 3' -60 NC_006151.1 + 59929 0.82 0.101528
Target:  5'- aGGCGCGCGCCGUCA-GCGgCG-GCUcGCa -3'
miRNA:   3'- -CCGCGUGCGGCAGUgCGC-GCaCGA-CG- -5'
29372 3' -60 NC_006151.1 + 76344 0.8 0.127597
Target:  5'- gGGUGCgGC-CCGUCGCGCGCGaucaucggcUGCUGCa -3'
miRNA:   3'- -CCGCG-UGcGGCAGUGCGCGC---------ACGACG- -5'
29372 3' -60 NC_006151.1 + 100649 0.8 0.13085
Target:  5'- uGCGcCGCGCCGUCgacgaGCGCgGCGUGCUGg -3'
miRNA:   3'- cCGC-GUGCGGCAG-----UGCG-CGCACGACg -5'
29372 3' -60 NC_006151.1 + 69818 0.79 0.144638
Target:  5'- aGGCGCuCGCCGUCcacguuguaGCGCGUGCggGCc -3'
miRNA:   3'- -CCGCGuGCGGCAGug-------CGCGCACGa-CG- -5'
29372 3' -60 NC_006151.1 + 106372 0.79 0.144638
Target:  5'- gGGCGCGCGcCCGcCGCgGCGCccGCUGCg -3'
miRNA:   3'- -CCGCGUGC-GGCaGUG-CGCGcaCGACG- -5'
29372 3' -60 NC_006151.1 + 112807 0.79 0.14977
Target:  5'- gGGCGCGCGUCGcUgcagcgcgccuucgcCACGCGCGUGCUcacGCu -3'
miRNA:   3'- -CCGCGUGCGGC-A---------------GUGCGCGCACGA---CG- -5'
29372 3' -60 NC_006151.1 + 106509 0.79 0.150891
Target:  5'- uGGCGCGCGCCGUgccggGCGCGCuggccaccuucaccGUGCUGg -3'
miRNA:   3'- -CCGCGUGCGGCAg----UGCGCG--------------CACGACg -5'
29372 3' -60 NC_006151.1 + 17093 0.79 0.150891
Target:  5'- aGGCGCGCGcCCGUCgggGCGCcgggggcuccggcgGCGgUGCUGCg -3'
miRNA:   3'- -CCGCGUGC-GGCAG---UGCG--------------CGC-ACGACG- -5'
29372 3' -60 NC_006151.1 + 86602 0.79 0.15202
Target:  5'- uGGCGCGCGCCGccgagUCGCcggaccgcgaGCGCGUGUgGCa -3'
miRNA:   3'- -CCGCGUGCGGC-----AGUG----------CGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 130291 0.79 0.152398
Target:  5'- gGGCGCGCGCCGgccgacggcgcggaGCGCGCGcGCcGCg -3'
miRNA:   3'- -CCGCGUGCGGCag------------UGCGCGCaCGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.