miRNA display CGI


Results 21 - 40 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 61743 0.79 0.159742
Target:  5'- uGGCGCACGCCcuguacgcgGUCGCGggggcCGUGgUGCUGCg -3'
miRNA:   3'- -CCGCGUGCGG---------CAGUGC-----GCGC-ACGACG- -5'
29372 3' -60 NC_006151.1 + 85775 0.78 0.167404
Target:  5'- uGGCGCugGacgcgcacucgauCCG-CGCGCGCGUGCaGCg -3'
miRNA:   3'- -CCGCGugC-------------GGCaGUGCGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 49604 0.78 0.167816
Target:  5'- aGCGCGCuGCCGgucCugGCG-GUGCUGCg -3'
miRNA:   3'- cCGCGUG-CGGCa--GugCGCgCACGACG- -5'
29372 3' -60 NC_006151.1 + 104568 0.78 0.167816
Target:  5'- gGGCGCGCGgCG-CGCG-GaCGUGCUGCa -3'
miRNA:   3'- -CCGCGUGCgGCaGUGCgC-GCACGACG- -5'
29372 3' -60 NC_006151.1 + 139281 0.78 0.171989
Target:  5'- cGGCGgACGCgccgcccucggCGUCuGCgGCGCGUGCUGCu -3'
miRNA:   3'- -CCGCgUGCG-----------GCAG-UG-CGCGCACGACG- -5'
29372 3' -60 NC_006151.1 + 69630 0.78 0.185067
Target:  5'- cGCGguCGgCGUCcCGCGCGUGCgGCg -3'
miRNA:   3'- cCGCguGCgGCAGuGCGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 117277 0.77 0.194267
Target:  5'- cGGcCGC-CGCCGacagcgCGCGCGCGaGCUGCu -3'
miRNA:   3'- -CC-GCGuGCGGCa-----GUGCGCGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 58784 0.77 0.198536
Target:  5'- cGGCGC-CGCCGUCACGUggacgaaGCGcGCcGCg -3'
miRNA:   3'- -CCGCGuGCGGCAGUGCG-------CGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 98360 0.77 0.199016
Target:  5'- gGGCGUGCGCgGgcucuggGCGCGCGcGCUGCg -3'
miRNA:   3'- -CCGCGUGCGgCag-----UGCGCGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 66528 0.77 0.201913
Target:  5'- cGCGCGCGCCGcgcucuucgggggCGCGCGCG-GCcGCg -3'
miRNA:   3'- cCGCGUGCGGCa------------GUGCGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 88428 0.77 0.208816
Target:  5'- cGCGCGCGUcaCGUUcaccacggagACGCGCGUGCgGCg -3'
miRNA:   3'- cCGCGUGCG--GCAG----------UGCGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 120802 0.77 0.213871
Target:  5'- cGGaGCGCGCCG-CGCGCGagGUGCUGg -3'
miRNA:   3'- -CCgCGUGCGGCaGUGCGCg-CACGACg -5'
29372 3' -60 NC_006151.1 + 130017 0.77 0.213871
Target:  5'- cGGCGCGCgccacgGCCGUCgugagccagcGCaGCGCGUGgUGCa -3'
miRNA:   3'- -CCGCGUG------CGGCAG----------UG-CGCGCACgACG- -5'
29372 3' -60 NC_006151.1 + 70908 0.77 0.21903
Target:  5'- cGUGCGCuGCC-UgGCGCGCGUGCUGg -3'
miRNA:   3'- cCGCGUG-CGGcAgUGCGCGCACGACg -5'
29372 3' -60 NC_006151.1 + 56228 0.77 0.221124
Target:  5'- uGGUGCGCcCCGaggacccgacggaguUCGCGCucuGCGUGCUGCa -3'
miRNA:   3'- -CCGCGUGcGGC---------------AGUGCG---CGCACGACG- -5'
29372 3' -60 NC_006151.1 + 19001 0.76 0.222177
Target:  5'- cGGCGCGCcaccaGCCG-CGCGCGCGccggcgaggugaaGCUGCa -3'
miRNA:   3'- -CCGCGUG-----CGGCaGUGCGCGCa------------CGACG- -5'
29372 3' -60 NC_006151.1 + 121162 0.76 0.224296
Target:  5'- uGGUGCAgacgGCCGUgUACGCGgcCGUGCUGCa -3'
miRNA:   3'- -CCGCGUg---CGGCA-GUGCGC--GCACGACG- -5'
29372 3' -60 NC_006151.1 + 83241 0.76 0.224296
Target:  5'- cGGCGCGCGCCcccaGUCGuCGCGCcaGCgGCg -3'
miRNA:   3'- -CCGCGUGCGG----CAGU-GCGCGcaCGaCG- -5'
29372 3' -60 NC_006151.1 + 111867 0.76 0.229668
Target:  5'- gGGuCGCAgGCCGUCuCGC-CGUcGCUGCa -3'
miRNA:   3'- -CC-GCGUgCGGCAGuGCGcGCA-CGACG- -5'
29372 3' -60 NC_006151.1 + 140050 0.76 0.240739
Target:  5'- cGGcCGCACGCCaccgaggcgGCGCGCGUGCUccGCg -3'
miRNA:   3'- -CC-GCGUGCGGcag------UGCGCGCACGA--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.