miRNA display CGI


Results 41 - 60 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 102394 0.76 0.240739
Target:  5'- uGGCGCugGUCGcgGCGCGCGUcGCgcgGCc -3'
miRNA:   3'- -CCGCGugCGGCagUGCGCGCA-CGa--CG- -5'
29372 3' -60 NC_006151.1 + 72273 0.76 0.244718
Target:  5'- cGGCGUggccagcaugcgguGCGgCGUCACGCGCGUGaugacgGCc -3'
miRNA:   3'- -CCGCG--------------UGCgGCAGUGCGCGCACga----CG- -5'
29372 3' -60 NC_006151.1 + 64468 0.76 0.24644
Target:  5'- cGGCGCGCGCCGcCGCGgcggggacgccCGCGgGCgcggGCg -3'
miRNA:   3'- -CCGCGUGCGGCaGUGC-----------GCGCaCGa---CG- -5'
29372 3' -60 NC_006151.1 + 117598 0.76 0.248751
Target:  5'- uGGCGC-CGCCGcaguagaccgugggcUCGCGCGCGaGCgUGCc -3'
miRNA:   3'- -CCGCGuGCGGC---------------AGUGCGCGCaCG-ACG- -5'
29372 3' -60 NC_006151.1 + 31740 0.76 0.252252
Target:  5'- aGGCGCccGCGCCGgggACGCGCcUGCgGCg -3'
miRNA:   3'- -CCGCG--UGCGGCag-UGCGCGcACGaCG- -5'
29372 3' -60 NC_006151.1 + 82427 0.75 0.264214
Target:  5'- aGGCGCGgGCgcUCGCGCGgGcGCUGCa -3'
miRNA:   3'- -CCGCGUgCGgcAGUGCGCgCaCGACG- -5'
29372 3' -60 NC_006151.1 + 58325 0.75 0.267891
Target:  5'- cGGCgGCGCGCCGgccuccgcguaggCGCGCGCGaaGCUGg -3'
miRNA:   3'- -CCG-CGUGCGGCa------------GUGCGCGCa-CGACg -5'
29372 3' -60 NC_006151.1 + 102957 0.75 0.270365
Target:  5'- cGGCGCcCGCCGccCACGacgGCGcGCUGCu -3'
miRNA:   3'- -CCGCGuGCGGCa-GUGCg--CGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 139806 0.75 0.272858
Target:  5'- cGCGCGCGCCGccgucuccgcgacgCACGCGCGggucgGC-GCg -3'
miRNA:   3'- cCGCGUGCGGCa-------------GUGCGCGCa----CGaCG- -5'
29372 3' -60 NC_006151.1 + 100016 0.75 0.27474
Target:  5'- uGGCGCACGCgCGcaacgucgaggcgcUCGCGCaCGaGCUGCa -3'
miRNA:   3'- -CCGCGUGCG-GC--------------AGUGCGcGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 119376 0.75 0.27474
Target:  5'- uGGCGUGCggcuucugcccgcaGCUGcUgGCGCGCGUGCUGUu -3'
miRNA:   3'- -CCGCGUG--------------CGGC-AgUGCGCGCACGACG- -5'
29372 3' -60 NC_006151.1 + 84908 0.75 0.276
Target:  5'- uGGUGUACGCCG-CGCGCggcgccgccuccgGCGUGCUcuucgGCa -3'
miRNA:   3'- -CCGCGUGCGGCaGUGCG-------------CGCACGA-----CG- -5'
29372 3' -60 NC_006151.1 + 103677 0.75 0.276632
Target:  5'- cGGCGCGCGCg---GCGgGgGUGCUGCg -3'
miRNA:   3'- -CCGCGUGCGgcagUGCgCgCACGACG- -5'
29372 3' -60 NC_006151.1 + 10187 0.75 0.276632
Target:  5'- uGCGUuCGCCgGUCGCgGCGCGggcggcgGCUGCa -3'
miRNA:   3'- cCGCGuGCGG-CAGUG-CGCGCa------CGACG- -5'
29372 3' -60 NC_006151.1 + 113429 0.75 0.276632
Target:  5'- uGGCGCuGCGCCGcuUCcgGCGCgGCGUGCUcaGCu -3'
miRNA:   3'- -CCGCG-UGCGGC--AG--UGCG-CGCACGA--CG- -5'
29372 3' -60 NC_006151.1 + 50006 0.75 0.276632
Target:  5'- -uUGCGCGCCG-CGCGCGCGgcccGCgcgGCg -3'
miRNA:   3'- ccGCGUGCGGCaGUGCGCGCa---CGa--CG- -5'
29372 3' -60 NC_006151.1 + 125156 0.75 0.283013
Target:  5'- uGGCGCA-GCUGUaCGCGCGCGaGCUcgaGCg -3'
miRNA:   3'- -CCGCGUgCGGCA-GUGCGCGCaCGA---CG- -5'
29372 3' -60 NC_006151.1 + 63909 0.75 0.283013
Target:  5'- aGGCGCGCGUaCG-CGCGCGCcGUGggGCu -3'
miRNA:   3'- -CCGCGUGCG-GCaGUGCGCG-CACgaCG- -5'
29372 3' -60 NC_006151.1 + 121996 0.75 0.283013
Target:  5'- cGGCGCGUGCCGcuucCACGCGCGcGUcGCg -3'
miRNA:   3'- -CCGCGUGCGGCa---GUGCGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 105568 0.75 0.285599
Target:  5'- uGCGCGCGCUGgcggccgccuucgaCGCGCGCGcggagcgGCUGCc -3'
miRNA:   3'- cCGCGUGCGGCa-------------GUGCGCGCa------CGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.