miRNA display CGI


Results 41 - 60 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 53974 0.66 0.732396
Target:  5'- cGGCG-GCGCCucCGCGgGCGUcGCgGCg -3'
miRNA:   3'- -CCGCgUGCGGcaGUGCgCGCA-CGaCG- -5'
29372 3' -60 NC_006151.1 + 67998 0.66 0.732396
Target:  5'- cGGCGC-CGCgGcCACGgGCucgGCgGCg -3'
miRNA:   3'- -CCGCGuGCGgCaGUGCgCGca-CGaCG- -5'
29372 3' -60 NC_006151.1 + 112952 0.66 0.732396
Target:  5'- cGCGCGCGauguuuuucaCCGUggcggaCGCGCGCGcGCcGCc -3'
miRNA:   3'- cCGCGUGC----------GGCA------GUGCGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 2658 0.66 0.732396
Target:  5'- aGCGCACGuuGUCcuggcggcagagGCGCaGCG-GCUcgGCc -3'
miRNA:   3'- cCGCGUGCggCAG------------UGCG-CGCaCGA--CG- -5'
29372 3' -60 NC_006151.1 + 119256 0.66 0.729535
Target:  5'- cGGCGcccuacCugGCCGggaacccgCagacggacaaggacGgGCGCGUGCUGCu -3'
miRNA:   3'- -CCGC------GugCGGCa-------G--------------UgCGCGCACGACG- -5'
29372 3' -60 NC_006151.1 + 39351 0.66 0.722833
Target:  5'- cGGCGCgGCGCCGgcUCAU---CGUGCUGg -3'
miRNA:   3'- -CCGCG-UGCGGC--AGUGcgcGCACGACg -5'
29372 3' -60 NC_006151.1 + 57900 0.66 0.722833
Target:  5'- aGGCGCAgGCCGcagcUCACGgGCccgaggGCguggaagGCg -3'
miRNA:   3'- -CCGCGUgCGGC----AGUGCgCGca----CGa------CG- -5'
29372 3' -60 NC_006151.1 + 98808 0.66 0.722833
Target:  5'- gGGCGC-UGCCG-CugGCGUuggcgGUGC-GCc -3'
miRNA:   3'- -CCGCGuGCGGCaGugCGCG-----CACGaCG- -5'
29372 3' -60 NC_006151.1 + 104393 0.66 0.722833
Target:  5'- uGGCccGCAuCGCCG--GCG-GCGUGCUGg -3'
miRNA:   3'- -CCG--CGU-GCGGCagUGCgCGCACGACg -5'
29372 3' -60 NC_006151.1 + 114453 0.66 0.722833
Target:  5'- cGGgGCcuGCGCCGgccaccgcaucgUCGCGCaCGUGUgGCa -3'
miRNA:   3'- -CCgCG--UGCGGC------------AGUGCGcGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 127304 0.66 0.722833
Target:  5'- uGGUaCAgGCCGUCGucCGCGCGgguccGCggGCg -3'
miRNA:   3'- -CCGcGUgCGGCAGU--GCGCGCa----CGa-CG- -5'
29372 3' -60 NC_006151.1 + 89058 0.66 0.722833
Target:  5'- uGCGCGguggccuuguCGCCGUgGaCGCGCGUccgGUUGUu -3'
miRNA:   3'- cCGCGU----------GCGGCAgU-GCGCGCA---CGACG- -5'
29372 3' -60 NC_006151.1 + 68230 0.66 0.721872
Target:  5'- aGGCGCAgCGcCCG-CGgGCGCGUcagguagacgcgcGCgGCg -3'
miRNA:   3'- -CCGCGU-GC-GGCaGUgCGCGCA-------------CGaCG- -5'
29372 3' -60 NC_006151.1 + 10621 0.67 0.713196
Target:  5'- cGCGCGC-CCGcgUGCGCuCGUGCcgGCg -3'
miRNA:   3'- cCGCGUGcGGCa-GUGCGcGCACGa-CG- -5'
29372 3' -60 NC_006151.1 + 25120 0.67 0.713196
Target:  5'- aGCGCugGgCGUgGaCGCGCGacaacccccUGCUGa -3'
miRNA:   3'- cCGCGugCgGCAgU-GCGCGC---------ACGACg -5'
29372 3' -60 NC_006151.1 + 39471 0.67 0.713196
Target:  5'- uGCGCugGCCcggGUgccgcgagcucCGCGCGgcCGUGCUGg -3'
miRNA:   3'- cCGCGugCGG---CA-----------GUGCGC--GCACGACg -5'
29372 3' -60 NC_006151.1 + 80671 0.67 0.713196
Target:  5'- cGCGCACGCagagaGUCugGguuCGCG-GCccgGCg -3'
miRNA:   3'- cCGCGUGCGg----CAGugC---GCGCaCGa--CG- -5'
29372 3' -60 NC_006151.1 + 116182 0.67 0.713196
Target:  5'- cGGaucuGCugGCCGUCguagauggcGCGCGCGaGCgugauguugGCg -3'
miRNA:   3'- -CCg---CGugCGGCAG---------UGCGCGCaCGa--------CG- -5'
29372 3' -60 NC_006151.1 + 122494 0.67 0.713196
Target:  5'- gGGCgagacgGCGCGCCG--GCGCGCGgacGC-GCu -3'
miRNA:   3'- -CCG------CGUGCGGCagUGCGCGCa--CGaCG- -5'
29372 3' -60 NC_006151.1 + 73764 0.67 0.713196
Target:  5'- uGGgGCACGCagggCACGUGCuggGCgGCg -3'
miRNA:   3'- -CCgCGUGCGgca-GUGCGCGca-CGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.