miRNA display CGI


Results 21 - 40 of 437 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 99268 0.66 0.748461
Target:  5'- gGGCuucaCGCGCCGccacugcgaccuccUCgaGCGCGCcGUGCUGg -3'
miRNA:   3'- -CCGc---GUGCGGC--------------AG--UGCGCG-CACGACg -5'
29372 3' -60 NC_006151.1 + 104824 0.66 0.741877
Target:  5'- cGGCGCGCGaCGgccUCGC-CGCG-GCggagGCg -3'
miRNA:   3'- -CCGCGUGCgGC---AGUGcGCGCaCGa---CG- -5'
29372 3' -60 NC_006151.1 + 78508 0.66 0.741877
Target:  5'- uGGUGCACGCCccCGCGauCGCGgacccgGCggggGCc -3'
miRNA:   3'- -CCGCGUGCGGcaGUGC--GCGCa-----CGa---CG- -5'
29372 3' -60 NC_006151.1 + 89246 0.66 0.741877
Target:  5'- gGGCGUcgugucgaGCGCCGUCguggucgacgGCGCcGCG-GCgaugGCc -3'
miRNA:   3'- -CCGCG--------UGCGGCAG----------UGCG-CGCaCGa---CG- -5'
29372 3' -60 NC_006151.1 + 41757 0.66 0.741877
Target:  5'- cGGCGuCACGUCcggcggaaGUUGCGCGCGgGaaGCg -3'
miRNA:   3'- -CCGC-GUGCGG--------CAGUGCGCGCaCgaCG- -5'
29372 3' -60 NC_006151.1 + 57433 0.66 0.741877
Target:  5'- aGCGuCACGuCCGUCGCG-GCG-GCccccGCg -3'
miRNA:   3'- cCGC-GUGC-GGCAGUGCgCGCaCGa---CG- -5'
29372 3' -60 NC_006151.1 + 62013 0.66 0.741877
Target:  5'- cGUGCGCGCCGccCugGCgGCcagccccccGCUGCg -3'
miRNA:   3'- cCGCGUGCGGCa-GugCG-CGca-------CGACG- -5'
29372 3' -60 NC_006151.1 + 62180 0.66 0.741877
Target:  5'- cGGCGgAgGCCGccCugGcCGUGUucacGCUGCu -3'
miRNA:   3'- -CCGCgUgCGGCa-GugC-GCGCA----CGACG- -5'
29372 3' -60 NC_006151.1 + 64419 0.66 0.741877
Target:  5'- aGGuCGCucuCGCUcugCGCGCGCGUGgCcGCc -3'
miRNA:   3'- -CC-GCGu--GCGGca-GUGCGCGCAC-GaCG- -5'
29372 3' -60 NC_006151.1 + 67729 0.66 0.741877
Target:  5'- cGGCGCgGCGCacaGgCACgGCGCG-GCgGCc -3'
miRNA:   3'- -CCGCG-UGCGg--CaGUG-CGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 76647 0.66 0.741877
Target:  5'- uGGCG-ACGaCCGcgugCGgGCGCGUG-UGCg -3'
miRNA:   3'- -CCGCgUGC-GGCa---GUgCGCGCACgACG- -5'
29372 3' -60 NC_006151.1 + 95277 0.66 0.741877
Target:  5'- uGGCGUugacgaagacgGCGgCGaCGCGCGCG-GCccgGCg -3'
miRNA:   3'- -CCGCG-----------UGCgGCaGUGCGCGCaCGa--CG- -5'
29372 3' -60 NC_006151.1 + 39772 0.66 0.741877
Target:  5'- gGGCGC-CGCCuUCGggcacCGCGCGgccaaccGCUGg -3'
miRNA:   3'- -CCGCGuGCGGcAGU-----GCGCGCa------CGACg -5'
29372 3' -60 NC_006151.1 + 54447 0.66 0.738095
Target:  5'- aGGCGCcCGCCGUgGCcgaGCGCcucuucgacaccugGUaccgcacGCUGCa -3'
miRNA:   3'- -CCGCGuGCGGCAgUG---CGCG--------------CA-------CGACG- -5'
29372 3' -60 NC_006151.1 + 84720 0.66 0.732396
Target:  5'- aGCGCgugGCCGagGCGCuCGUGgUGCu -3'
miRNA:   3'- cCGCGug-CGGCagUGCGcGCACgACG- -5'
29372 3' -60 NC_006151.1 + 104690 0.66 0.732396
Target:  5'- gGGUGCAC-CUG-CACGUGCcGagcaccgagcUGCUGCg -3'
miRNA:   3'- -CCGCGUGcGGCaGUGCGCG-C----------ACGACG- -5'
29372 3' -60 NC_006151.1 + 119873 0.66 0.732396
Target:  5'- uGCGCACGCuCGUggagACGCGCGacuucaaGCUccGCg -3'
miRNA:   3'- cCGCGUGCG-GCAg---UGCGCGCa------CGA--CG- -5'
29372 3' -60 NC_006151.1 + 53974 0.66 0.732396
Target:  5'- cGGCG-GCGCCucCGCGgGCGUcGCgGCg -3'
miRNA:   3'- -CCGCgUGCGGcaGUGCgCGCA-CGaCG- -5'
29372 3' -60 NC_006151.1 + 67998 0.66 0.732396
Target:  5'- cGGCGC-CGCgGcCACGgGCucgGCgGCg -3'
miRNA:   3'- -CCGCGuGCGgCaGUGCgCGca-CGaCG- -5'
29372 3' -60 NC_006151.1 + 64552 0.66 0.732396
Target:  5'- cGGCG-AgGCCGUgGCGCGCcaGCUcgacgaGCa -3'
miRNA:   3'- -CCGCgUgCGGCAgUGCGCGcaCGA------CG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.