Results 21 - 40 of 437 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29372 | 3' | -60 | NC_006151.1 | + | 99268 | 0.66 | 0.748461 |
Target: 5'- gGGCuucaCGCGCCGccacugcgaccuccUCgaGCGCGCcGUGCUGg -3' miRNA: 3'- -CCGc---GUGCGGC--------------AG--UGCGCG-CACGACg -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 104824 | 0.66 | 0.741877 |
Target: 5'- cGGCGCGCGaCGgccUCGC-CGCG-GCggagGCg -3' miRNA: 3'- -CCGCGUGCgGC---AGUGcGCGCaCGa---CG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 78508 | 0.66 | 0.741877 |
Target: 5'- uGGUGCACGCCccCGCGauCGCGgacccgGCggggGCc -3' miRNA: 3'- -CCGCGUGCGGcaGUGC--GCGCa-----CGa---CG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 89246 | 0.66 | 0.741877 |
Target: 5'- gGGCGUcgugucgaGCGCCGUCguggucgacgGCGCcGCG-GCgaugGCc -3' miRNA: 3'- -CCGCG--------UGCGGCAG----------UGCG-CGCaCGa---CG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 41757 | 0.66 | 0.741877 |
Target: 5'- cGGCGuCACGUCcggcggaaGUUGCGCGCGgGaaGCg -3' miRNA: 3'- -CCGC-GUGCGG--------CAGUGCGCGCaCgaCG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 57433 | 0.66 | 0.741877 |
Target: 5'- aGCGuCACGuCCGUCGCG-GCG-GCccccGCg -3' miRNA: 3'- cCGC-GUGC-GGCAGUGCgCGCaCGa---CG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 62013 | 0.66 | 0.741877 |
Target: 5'- cGUGCGCGCCGccCugGCgGCcagccccccGCUGCg -3' miRNA: 3'- cCGCGUGCGGCa-GugCG-CGca-------CGACG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 62180 | 0.66 | 0.741877 |
Target: 5'- cGGCGgAgGCCGccCugGcCGUGUucacGCUGCu -3' miRNA: 3'- -CCGCgUgCGGCa-GugC-GCGCA----CGACG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 64419 | 0.66 | 0.741877 |
Target: 5'- aGGuCGCucuCGCUcugCGCGCGCGUGgCcGCc -3' miRNA: 3'- -CC-GCGu--GCGGca-GUGCGCGCAC-GaCG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 67729 | 0.66 | 0.741877 |
Target: 5'- cGGCGCgGCGCacaGgCACgGCGCG-GCgGCc -3' miRNA: 3'- -CCGCG-UGCGg--CaGUG-CGCGCaCGaCG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 76647 | 0.66 | 0.741877 |
Target: 5'- uGGCG-ACGaCCGcgugCGgGCGCGUG-UGCg -3' miRNA: 3'- -CCGCgUGC-GGCa---GUgCGCGCACgACG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 95277 | 0.66 | 0.741877 |
Target: 5'- uGGCGUugacgaagacgGCGgCGaCGCGCGCG-GCccgGCg -3' miRNA: 3'- -CCGCG-----------UGCgGCaGUGCGCGCaCGa--CG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 39772 | 0.66 | 0.741877 |
Target: 5'- gGGCGC-CGCCuUCGggcacCGCGCGgccaaccGCUGg -3' miRNA: 3'- -CCGCGuGCGGcAGU-----GCGCGCa------CGACg -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 54447 | 0.66 | 0.738095 |
Target: 5'- aGGCGCcCGCCGUgGCcgaGCGCcucuucgacaccugGUaccgcacGCUGCa -3' miRNA: 3'- -CCGCGuGCGGCAgUG---CGCG--------------CA-------CGACG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 84720 | 0.66 | 0.732396 |
Target: 5'- aGCGCgugGCCGagGCGCuCGUGgUGCu -3' miRNA: 3'- cCGCGug-CGGCagUGCGcGCACgACG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 104690 | 0.66 | 0.732396 |
Target: 5'- gGGUGCAC-CUG-CACGUGCcGagcaccgagcUGCUGCg -3' miRNA: 3'- -CCGCGUGcGGCaGUGCGCG-C----------ACGACG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 119873 | 0.66 | 0.732396 |
Target: 5'- uGCGCACGCuCGUggagACGCGCGacuucaaGCUccGCg -3' miRNA: 3'- cCGCGUGCG-GCAg---UGCGCGCa------CGA--CG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 53974 | 0.66 | 0.732396 |
Target: 5'- cGGCG-GCGCCucCGCGgGCGUcGCgGCg -3' miRNA: 3'- -CCGCgUGCGGcaGUGCgCGCA-CGaCG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 67998 | 0.66 | 0.732396 |
Target: 5'- cGGCGC-CGCgGcCACGgGCucgGCgGCg -3' miRNA: 3'- -CCGCGuGCGgCaGUGCgCGca-CGaCG- -5' |
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29372 | 3' | -60 | NC_006151.1 | + | 64552 | 0.66 | 0.732396 |
Target: 5'- cGGCG-AgGCCGUgGCGCGCcaGCUcgacgaGCa -3' miRNA: 3'- -CCGCgUgCGGCAgUGCGCGcaCGA------CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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