miRNA display CGI


Results 21 - 40 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 18710 0.67 0.693737
Target:  5'- cGGCGUcgugACGCCGUCcacguagauCGCGuCGUcGCcGCc -3'
miRNA:   3'- -CCGCG----UGCGGCAGu--------GCGC-GCA-CGaCG- -5'
29372 3' -60 NC_006151.1 + 19001 0.76 0.222177
Target:  5'- cGGCGCGCcaccaGCCG-CGCGCGCGccggcgaggugaaGCUGCa -3'
miRNA:   3'- -CCGCGUG-----CGGCaGUGCGCGCa------------CGACG- -5'
29372 3' -60 NC_006151.1 + 19058 0.69 0.565287
Target:  5'- gGGCGCAgGCacuCGggCGCGCGCGggugGUagaUGCa -3'
miRNA:   3'- -CCGCGUgCG---GCa-GUGCGCGCa---CG---ACG- -5'
29372 3' -60 NC_006151.1 + 19632 0.72 0.409308
Target:  5'- cGGCGC-CGUCGcCGCGCGCGUcgagggugaaGUUGg -3'
miRNA:   3'- -CCGCGuGCGGCaGUGCGCGCA----------CGACg -5'
29372 3' -60 NC_006151.1 + 20137 0.67 0.674084
Target:  5'- gGGCGgGCGCCG-CGgGgGCG-GC-GCg -3'
miRNA:   3'- -CCGCgUGCGGCaGUgCgCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 20304 0.74 0.309705
Target:  5'- gGGCGCcCGCCGUgGCGUugGCG-GCgGCg -3'
miRNA:   3'- -CCGCGuGCGGCAgUGCG--CGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 20772 0.69 0.584921
Target:  5'- cGGaCGCGCGCCGg-GCGaGCG-GCUcGCg -3'
miRNA:   3'- -CC-GCGUGCGGCagUGCgCGCaCGA-CG- -5'
29372 3' -60 NC_006151.1 + 20828 0.68 0.658265
Target:  5'- uGGUGCACGCgGgggcagaggucguacUCGgcggcguacuCGCGCGUGUaGCa -3'
miRNA:   3'- -CCGCGUGCGgC---------------AGU----------GCGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 20897 0.68 0.624521
Target:  5'- aGGCGCAgcaGCUc-CACGCGCccGCUGUa -3'
miRNA:   3'- -CCGCGUg--CGGcaGUGCGCGcaCGACG- -5'
29372 3' -60 NC_006151.1 + 20979 0.7 0.53618
Target:  5'- gGGCGCGuCGCCGggCACGaggacgGCGcUGCcgGCg -3'
miRNA:   3'- -CCGCGU-GCGGCa-GUGCg-----CGC-ACGa-CG- -5'
29372 3' -60 NC_006151.1 + 21598 0.67 0.664204
Target:  5'- uGGCGUACGgCGUgGCG-GCG-GCguagGCc -3'
miRNA:   3'- -CCGCGUGCgGCAgUGCgCGCaCGa---CG- -5'
29372 3' -60 NC_006151.1 + 21751 0.68 0.634452
Target:  5'- aGCaCGCGCCGaacuugUACGUGCgGUGCUGg -3'
miRNA:   3'- cCGcGUGCGGCa-----GUGCGCG-CACGACg -5'
29372 3' -60 NC_006151.1 + 22329 0.67 0.674084
Target:  5'- gGGCGaccaGCGCCGcCAauaGCGC-UGCgaGCa -3'
miRNA:   3'- -CCGCg---UGCGGCaGUg--CGCGcACGa-CG- -5'
29372 3' -60 NC_006151.1 + 23626 0.68 0.654301
Target:  5'- gGGCGUACuCCaucaggguGUCgAUGCGCGUGCggGUg -3'
miRNA:   3'- -CCGCGUGcGG--------CAG-UGCGCGCACGa-CG- -5'
29372 3' -60 NC_006151.1 + 24211 0.7 0.526591
Target:  5'- aGGCGa--GCCa-CGCGCGCGUaCUGCg -3'
miRNA:   3'- -CCGCgugCGGcaGUGCGCGCAcGACG- -5'
29372 3' -60 NC_006151.1 + 24446 0.66 0.769745
Target:  5'- uGGUGUcguaGCgGUCGCGCGCGaGCa-- -3'
miRNA:   3'- -CCGCGug--CGgCAGUGCGCGCaCGacg -5'
29372 3' -60 NC_006151.1 + 25120 0.67 0.713196
Target:  5'- aGCGCugGgCGUgGaCGCGCGacaacccccUGCUGa -3'
miRNA:   3'- cCGCGugCgGCAgU-GCGCGC---------ACGACg -5'
29372 3' -60 NC_006151.1 + 25414 0.67 0.693737
Target:  5'- gGGCGC-CGCCGcccCACGCGCGc----- -3'
miRNA:   3'- -CCGCGuGCGGCa--GUGCGCGCacgacg -5'
29372 3' -60 NC_006151.1 + 26358 0.68 0.654301
Target:  5'- cGGCGggcCGCGUCGggGCGCGCGUcccccgGCggGCg -3'
miRNA:   3'- -CCGC---GUGCGGCagUGCGCGCA------CGa-CG- -5'
29372 3' -60 NC_006151.1 + 26957 0.7 0.498234
Target:  5'- cGCGCuCGuuGagcUCGCGCaGCGcGCUGCg -3'
miRNA:   3'- cCGCGuGCggC---AGUGCG-CGCaCGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.