miRNA display CGI


Results 21 - 40 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 136941 0.74 0.309705
Target:  5'- gGGCGCcgacgGCGCCGUCcuGCGCcGCcUGCUGg -3'
miRNA:   3'- -CCGCG-----UGCGGCAG--UGCG-CGcACGACg -5'
29372 3' -60 NC_006151.1 + 136671 0.67 0.6908
Target:  5'- aGCGCGCGgccgccgccuucuuCCGcCACGUGCGgGC-GCa -3'
miRNA:   3'- cCGCGUGC--------------GGCaGUGCGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 136434 0.83 0.086803
Target:  5'- cGGCGCACGCCG-CGCGCuacgucgacgagcGCGUGC-GCg -3'
miRNA:   3'- -CCGCGUGCGGCaGUGCG-------------CGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 136056 0.67 0.702522
Target:  5'- cGCGCaccggcaACGCCGagUACGCGcCGgagcgcccGCUGCg -3'
miRNA:   3'- cCGCG-------UGCGGCa-GUGCGC-GCa-------CGACG- -5'
29372 3' -60 NC_006151.1 + 135466 0.75 0.289512
Target:  5'- aGGUGCGCGCCagcguGUC-CGCGCGggccagGCgGCg -3'
miRNA:   3'- -CCGCGUGCGG-----CAGuGCGCGCa-----CGaCG- -5'
29372 3' -60 NC_006151.1 + 135160 0.67 0.664204
Target:  5'- cGGCGgGCGCgGcCcggACGgGCGccgGCUGCc -3'
miRNA:   3'- -CCGCgUGCGgCaG---UGCgCGCa--CGACG- -5'
29372 3' -60 NC_006151.1 + 135105 0.71 0.479712
Target:  5'- gGGCGgGCGgCGguaGCGCGCGgggcggGCUGg -3'
miRNA:   3'- -CCGCgUGCgGCag-UGCGCGCa-----CGACg -5'
29372 3' -60 NC_006151.1 + 132490 0.7 0.488932
Target:  5'- aGGCGCGCGUagCGcuccUCGCGCGCccGCaGCg -3'
miRNA:   3'- -CCGCGUGCG--GC----AGUGCGCGcaCGaCG- -5'
29372 3' -60 NC_006151.1 + 132376 0.73 0.345707
Target:  5'- aGGCGCGCGaCGUCGCGguaguagcgccCGCGcaccaGCUGCc -3'
miRNA:   3'- -CCGCGUGCgGCAGUGC-----------GCGCa----CGACG- -5'
29372 3' -60 NC_006151.1 + 132025 0.68 0.644381
Target:  5'- uGGUGCGagagguaGCCGgcgGCGCGCG-GCaGCg -3'
miRNA:   3'- -CCGCGUg------CGGCag-UGCGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 131850 0.7 0.53618
Target:  5'- cGGgGCG-GCCGagACGCGCGccgGCgGCg -3'
miRNA:   3'- -CCgCGUgCGGCagUGCGCGCa--CGaCG- -5'
29372 3' -60 NC_006151.1 + 131787 0.68 0.624521
Target:  5'- gGGCGC-CGCCGUCgucaGCGCGCcauccuccucGgccucgGCUaGCg -3'
miRNA:   3'- -CCGCGuGCGGCAG----UGCGCG----------Ca-----CGA-CG- -5'
29372 3' -60 NC_006151.1 + 131549 0.67 0.700573
Target:  5'- aGCGCcucggGCGCCG-CACGggcccCGCGUcgcucaugguggucGCUGCg -3'
miRNA:   3'- cCGCG-----UGCGGCaGUGC-----GCGCA--------------CGACG- -5'
29372 3' -60 NC_006151.1 + 130839 0.69 0.583936
Target:  5'- cGGCGCGgagucguCGCCGUCGgCGgCGCGgGCgggaccGCa -3'
miRNA:   3'- -CCGCGU-------GCGGCAGU-GC-GCGCaCGa-----CG- -5'
29372 3' -60 NC_006151.1 + 130499 0.7 0.517068
Target:  5'- cGGCGCcacACGCCGcgcgucUCGgGCGCGgGCgucGCg -3'
miRNA:   3'- -CCGCG---UGCGGC------AGUgCGCGCaCGa--CG- -5'
29372 3' -60 NC_006151.1 + 130423 0.69 0.593801
Target:  5'- gGGCGCGcCGaCCGUCgaggacugcagcgGCGCcagaaacaugGCGUGgUGCa -3'
miRNA:   3'- -CCGCGU-GC-GGCAG-------------UGCG----------CGCACgACG- -5'
29372 3' -60 NC_006151.1 + 130372 0.67 0.703495
Target:  5'- cGCGCGCGCCGcggCGuccaGCGCGaagGCcaGCg -3'
miRNA:   3'- cCGCGUGCGGCa--GUg---CGCGCa--CGa-CG- -5'
29372 3' -60 NC_006151.1 + 130291 0.79 0.152398
Target:  5'- gGGCGCGCGCCGgccgacggcgcggaGCGCGCGcGCcGCg -3'
miRNA:   3'- -CCGCGUGCGGCag------------UGCGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 130017 0.77 0.213871
Target:  5'- cGGCGCGCgccacgGCCGUCgugagccagcGCaGCGCGUGgUGCa -3'
miRNA:   3'- -CCGCGUG------CGGCAG----------UG-CGCGCACgACG- -5'
29372 3' -60 NC_006151.1 + 129956 0.72 0.384613
Target:  5'- aGCG-ACGCCGgCACGCGCGaGCgcacgGCg -3'
miRNA:   3'- cCGCgUGCGGCaGUGCGCGCaCGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.