miRNA display CGI


Results 1 - 20 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 141756 0.67 0.703495
Target:  5'- gGGCGCGCGCCccgGUgGCGuCGCcgGUuCUGUc -3'
miRNA:   3'- -CCGCGUGCGG---CAgUGC-GCG--CAcGACG- -5'
29372 3' -60 NC_006151.1 + 141610 0.66 0.751268
Target:  5'- cGGCGagGCuGCCGggaUCGgGCGgGUcGCUGCc -3'
miRNA:   3'- -CCGCg-UG-CGGC---AGUgCGCgCA-CGACG- -5'
29372 3' -60 NC_006151.1 + 140364 0.73 0.368707
Target:  5'- cGCcCGCGUCGUCgaGCGCggcucgagcuGCGUGCUGCc -3'
miRNA:   3'- cCGcGUGCGGCAG--UGCG----------CGCACGACG- -5'
29372 3' -60 NC_006151.1 + 140272 0.68 0.634452
Target:  5'- cGCGaCACGcCCGUCGacgaGCuCGUGCgccgGCg -3'
miRNA:   3'- cCGC-GUGC-GGCAGUg---CGcGCACGa---CG- -5'
29372 3' -60 NC_006151.1 + 140183 0.68 0.637431
Target:  5'- uGCGCACGCUGgaccccaucguggcCAC-CGCGggggcggUGCUGCa -3'
miRNA:   3'- cCGCGUGCGGCa-------------GUGcGCGC-------ACGACG- -5'
29372 3' -60 NC_006151.1 + 140050 0.76 0.240739
Target:  5'- cGGcCGCACGCCaccgaggcgGCGCGCGUGCUccGCg -3'
miRNA:   3'- -CC-GCGUGCGGcag------UGCGCGCACGA--CG- -5'
29372 3' -60 NC_006151.1 + 139806 0.75 0.272858
Target:  5'- cGCGCGCGCCGccgucuccgcgacgCACGCGCGggucgGC-GCg -3'
miRNA:   3'- cCGCGUGCGGCa-------------GUGCGCGCa----CGaCG- -5'
29372 3' -60 NC_006151.1 + 139281 0.78 0.171989
Target:  5'- cGGCGgACGCgccgcccucggCGUCuGCgGCGCGUGCUGCu -3'
miRNA:   3'- -CCGCgUGCG-----------GCAG-UG-CGCGCACGACG- -5'
29372 3' -60 NC_006151.1 + 139220 0.71 0.479712
Target:  5'- cGGCGaCGCuGCCGcacaUCGCGCGCGUcuccgGC-GCg -3'
miRNA:   3'- -CCGC-GUG-CGGC----AGUGCGCGCA-----CGaCG- -5'
29372 3' -60 NC_006151.1 + 139103 0.69 0.56138
Target:  5'- uGGCGCuguucacgacccuCGgCGUCACGCGCGccccgUGC-GCc -3'
miRNA:   3'- -CCGCGu------------GCgGCAGUGCGCGC-----ACGaCG- -5'
29372 3' -60 NC_006151.1 + 138711 0.72 0.400967
Target:  5'- cGGCGCugcGCGCCG-CGCGCGgguCGUGUacGCg -3'
miRNA:   3'- -CCGCG---UGCGGCaGUGCGC---GCACGa-CG- -5'
29372 3' -60 NC_006151.1 + 138541 0.67 0.713196
Target:  5'- cGCGUACGCCGgcCugGgCGCGUaCUacGCg -3'
miRNA:   3'- cCGCGUGCGGCa-GugC-GCGCAcGA--CG- -5'
29372 3' -60 NC_006151.1 + 138231 0.7 0.507614
Target:  5'- gGGCGCGCGCaCGagUACGCGgGcGCgaccGCg -3'
miRNA:   3'- -CCGCGUGCG-GCa-GUGCGCgCaCGa---CG- -5'
29372 3' -60 NC_006151.1 + 138156 0.72 0.416907
Target:  5'- cGGCGCGCGCucgaggccuuCGUgGCggacguggccaugGCGCccGUGCUGCg -3'
miRNA:   3'- -CCGCGUGCG----------GCAgUG-------------CGCG--CACGACG- -5'
29372 3' -60 NC_006151.1 + 138102 0.83 0.087028
Target:  5'- cGGCGCACGCCG-CugGCGgacaUGCUGCg -3'
miRNA:   3'- -CCGCGUGCGGCaGugCGCgc--ACGACG- -5'
29372 3' -60 NC_006151.1 + 138004 1.14 0.0006
Target:  5'- cGGCGCACGCCGUCACGCGCGUGCUGCa -3'
miRNA:   3'- -CCGCGUGCGGCAGUGCGCGCACGACG- -5'
29372 3' -60 NC_006151.1 + 137770 0.71 0.452582
Target:  5'- uGGCGCGCGUgcuccagCAgGC-CGUGCUGCu -3'
miRNA:   3'- -CCGCGUGCGgca----GUgCGcGCACGACG- -5'
29372 3' -60 NC_006151.1 + 137102 0.71 0.474222
Target:  5'- cGGUGCugGCCGgggacgccugggggCGCGCGaCG-GCgcgGCg -3'
miRNA:   3'- -CCGCGugCGGCa-------------GUGCGC-GCaCGa--CG- -5'
29372 3' -60 NC_006151.1 + 137043 0.67 0.703495
Target:  5'- cGCGUgccccccgGCGCCGgugUAC-CGCGUGgaGCu -3'
miRNA:   3'- cCGCG--------UGCGGCa--GUGcGCGCACgaCG- -5'
29372 3' -60 NC_006151.1 + 136979 0.69 0.594789
Target:  5'- uGGcCGcCGCGCCGggcggcgggCGCGCGCGcacgGCgcuggGCg -3'
miRNA:   3'- -CC-GC-GUGCGGCa--------GUGCGCGCa---CGa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.