miRNA display CGI


Results 1 - 20 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 2589 0.73 0.338272
Target:  5'- cGCGCugGCgGUagGCGCGCG-GCgGCa -3'
miRNA:   3'- cCGCGugCGgCAg-UGCGCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 2658 0.66 0.732396
Target:  5'- aGCGCACGuuGUCcuggcggcagagGCGCaGCG-GCUcgGCc -3'
miRNA:   3'- cCGCGUGCggCAG------------UGCG-CGCaCGA--CG- -5'
29372 3' -60 NC_006151.1 + 3245 0.7 0.486157
Target:  5'- cGGCGCggcggcggagcgggGCGCCGcgGCGCGCG-GCgaugUGCg -3'
miRNA:   3'- -CCGCG--------------UGCGGCagUGCGCGCaCG----ACG- -5'
29372 3' -60 NC_006151.1 + 3439 0.74 0.316671
Target:  5'- cGGCGgAagcCGCCGUCGgGCGCGgGgUGCu -3'
miRNA:   3'- -CCGCgU---GCGGCAGUgCGCGCaCgACG- -5'
29372 3' -60 NC_006151.1 + 3872 0.68 0.654301
Target:  5'- gGGCGCcCGCCGcCGCcgGCGCcggcGCUGg -3'
miRNA:   3'- -CCGCGuGCGGCaGUG--CGCGca--CGACg -5'
29372 3' -60 NC_006151.1 + 4300 0.69 0.594789
Target:  5'- aGGCGUcCGCCagcUCGCGgggcaCGCGgccggGCUGCg -3'
miRNA:   3'- -CCGCGuGCGGc--AGUGC-----GCGCa----CGACG- -5'
29372 3' -60 NC_006151.1 + 4498 0.71 0.470579
Target:  5'- uGGC-CACGgCGcUCAC-CGCGUGCgGCa -3'
miRNA:   3'- -CCGcGUGCgGC-AGUGcGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 4864 0.66 0.751268
Target:  5'- cGGCGC-CGCCGUaGCGgaCGCG-GCcGUc -3'
miRNA:   3'- -CCGCGuGCGGCAgUGC--GCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 7057 0.68 0.654301
Target:  5'- gGGCGCGCGgaggCGUCuccCGCGCGccucugauuUGCaUGCc -3'
miRNA:   3'- -CCGCGUGCg---GCAGu--GCGCGC---------ACG-ACG- -5'
29372 3' -60 NC_006151.1 + 7171 0.74 0.316671
Target:  5'- aGGCGCAUGCuCGgCACGCGacccaccccCGUGgUGCu -3'
miRNA:   3'- -CCGCGUGCG-GCaGUGCGC---------GCACgACG- -5'
29372 3' -60 NC_006151.1 + 8832 0.71 0.470579
Target:  5'- uGCGCGCGCC-UCucccCGUGCGUGuCUcGCu -3'
miRNA:   3'- cCGCGUGCGGcAGu---GCGCGCAC-GA-CG- -5'
29372 3' -60 NC_006151.1 + 10187 0.75 0.276632
Target:  5'- uGCGUuCGCCgGUCGCgGCGCGggcggcgGCUGCa -3'
miRNA:   3'- cCGCGuGCGG-CAGUG-CGCGCa------CGACG- -5'
29372 3' -60 NC_006151.1 + 10497 0.72 0.400967
Target:  5'- cGGCGCGCGCCcgccgccgCAgGCGCGUccccgGCgcggGCg -3'
miRNA:   3'- -CCGCGUGCGGca------GUgCGCGCA-----CGa---CG- -5'
29372 3' -60 NC_006151.1 + 10621 0.67 0.713196
Target:  5'- cGCGCGC-CCGcgUGCGCuCGUGCcgGCg -3'
miRNA:   3'- cCGCGUGcGGCa-GUGCGcGCACGa-CG- -5'
29372 3' -60 NC_006151.1 + 11649 0.71 0.470579
Target:  5'- cGCGCACGCCGacCGCcCGCGU-UUGCu -3'
miRNA:   3'- cCGCGUGCGGCa-GUGcGCGCAcGACG- -5'
29372 3' -60 NC_006151.1 + 11693 0.66 0.751268
Target:  5'- cGGgGC-CGCgGg-ACgGCGCGUGCgGCg -3'
miRNA:   3'- -CCgCGuGCGgCagUG-CGCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 15036 0.68 0.644381
Target:  5'- aGGUGCGCGUCcacgGCGCGCGggGCcccgGCg -3'
miRNA:   3'- -CCGCGUGCGGcag-UGCGCGCa-CGa---CG- -5'
29372 3' -60 NC_006151.1 + 17093 0.79 0.150891
Target:  5'- aGGCGCGCGcCCGUCgggGCGCcgggggcuccggcgGCGgUGCUGCg -3'
miRNA:   3'- -CCGCGUGC-GGCAG---UGCG--------------CGC-ACGACG- -5'
29372 3' -60 NC_006151.1 + 17476 0.69 0.555533
Target:  5'- cGGCGUguccuCGUCGgcggCGCGC-CGcUGCUGCa -3'
miRNA:   3'- -CCGCGu----GCGGCa---GUGCGcGC-ACGACG- -5'
29372 3' -60 NC_006151.1 + 18330 0.66 0.732396
Target:  5'- gGGCGCACGuacagcCCGUCGuccuCGuCGC-UGCUGa -3'
miRNA:   3'- -CCGCGUGC------GGCAGU----GC-GCGcACGACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.