miRNA display CGI


Results 41 - 60 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 27098 0.71 0.43236
Target:  5'- gGGCGCGCGugucgcCCGUCACGUcggcggccgagacgGCGaUGCcGCg -3'
miRNA:   3'- -CCGCGUGC------GGCAGUGCG--------------CGC-ACGaCG- -5'
29372 3' -60 NC_006151.1 + 30611 0.69 0.594789
Target:  5'- -aCGCGgGCgGUCgGCGUGCGcGCUGUg -3'
miRNA:   3'- ccGCGUgCGgCAG-UGCGCGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 31643 0.66 0.751268
Target:  5'- aGCGCACGCgGgCGCGCGgGgagGgaGg -3'
miRNA:   3'- cCGCGUGCGgCaGUGCGCgCa--CgaCg -5'
29372 3' -60 NC_006151.1 + 31740 0.76 0.252252
Target:  5'- aGGCGCccGCGCCGgggACGCGCcUGCgGCg -3'
miRNA:   3'- -CCGCG--UGCGGCag-UGCGCGcACGaCG- -5'
29372 3' -60 NC_006151.1 + 31773 0.67 0.678027
Target:  5'- gGGCGCGCGCCGggcggcucuccuccuUCAC-CGCc-GCcGCg -3'
miRNA:   3'- -CCGCGUGCGGC---------------AGUGcGCGcaCGaCG- -5'
29372 3' -60 NC_006151.1 + 33123 0.68 0.634452
Target:  5'- gGGCGCGUGCCGcgggccgagugUCGgGCGaGUGCgagGCg -3'
miRNA:   3'- -CCGCGUGCGGC-----------AGUgCGCgCACGa--CG- -5'
29372 3' -60 NC_006151.1 + 34608 0.73 0.368707
Target:  5'- aGCGCGCGCCGagcgCgagGCGCGgGUGggGCg -3'
miRNA:   3'- cCGCGUGCGGCa---G---UGCGCgCACgaCG- -5'
29372 3' -60 NC_006151.1 + 38988 0.7 0.507614
Target:  5'- uGGCGCAcauCGCCG-CGCGCcGCG-GC-GCc -3'
miRNA:   3'- -CCGCGU---GCGGCaGUGCG-CGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 39351 0.66 0.722833
Target:  5'- cGGCGCgGCGCCGgcUCAU---CGUGCUGg -3'
miRNA:   3'- -CCGCG-UGCGGC--AGUGcgcGCACGACg -5'
29372 3' -60 NC_006151.1 + 39471 0.67 0.713196
Target:  5'- uGCGCugGCCcggGUgccgcgagcucCGCGCGgcCGUGCUGg -3'
miRNA:   3'- cCGCGugCGG---CA-----------GUGCGC--GCACGACg -5'
29372 3' -60 NC_006151.1 + 39669 0.67 0.703495
Target:  5'- cGcCGCGCGCCuacCGCcaGCGCGUGCUc- -3'
miRNA:   3'- cC-GCGUGCGGca-GUG--CGCGCACGAcg -5'
29372 3' -60 NC_006151.1 + 39772 0.66 0.741877
Target:  5'- gGGCGC-CGCCuUCGggcacCGCGCGgccaaccGCUGg -3'
miRNA:   3'- -CCGCGuGCGGcAGU-----GCGCGCa------CGACg -5'
29372 3' -60 NC_006151.1 + 39891 0.7 0.498234
Target:  5'- cGGCcgaguuGCGCGCCuUCuGCGcCGCGgGCUGCu -3'
miRNA:   3'- -CCG------CGUGCGGcAG-UGC-GCGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 39966 0.68 0.604683
Target:  5'- gGGCGCcguCGCCGcCGCGgGCGccccGCcgGCc -3'
miRNA:   3'- -CCGCGu--GCGGCaGUGCgCGCa---CGa-CG- -5'
29372 3' -60 NC_006151.1 + 41757 0.66 0.741877
Target:  5'- cGGCGuCACGUCcggcggaaGUUGCGCGCGgGaaGCg -3'
miRNA:   3'- -CCGC-GUGCGG--------CAGUGCGCGCaCgaCG- -5'
29372 3' -60 NC_006151.1 + 44184 0.67 0.674084
Target:  5'- cGCGgGuCGCCGUC-CGgGCG-GCgGCg -3'
miRNA:   3'- cCGCgU-GCGGCAGuGCgCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 45441 0.66 0.76056
Target:  5'- cGCGgGCGUCG-CACGCaccGCGggGCgGCg -3'
miRNA:   3'- cCGCgUGCGGCaGUGCG---CGCa-CGaCG- -5'
29372 3' -60 NC_006151.1 + 47276 0.67 0.683931
Target:  5'- cGGCGCGCaG-CGUC-CGCGgcUGCUGUg -3'
miRNA:   3'- -CCGCGUG-CgGCAGuGCGCgcACGACG- -5'
29372 3' -60 NC_006151.1 + 48900 0.72 0.426311
Target:  5'- uGCGCugGCCGagUAC-CGCGgccGCUGCc -3'
miRNA:   3'- cCGCGugCGGCa-GUGcGCGCa--CGACG- -5'
29372 3' -60 NC_006151.1 + 49166 0.68 0.634452
Target:  5'- aGGCcuggGCGCGCCGcgGgGUGC-UGCUGCu -3'
miRNA:   3'- -CCG----CGUGCGGCagUgCGCGcACGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.