miRNA display CGI


Results 41 - 60 of 437 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29372 3' -60 NC_006151.1 + 121046 0.66 0.751268
Target:  5'- uGUGCugGCCuGcC-CGCGCGUGg-GCu -3'
miRNA:   3'- cCGCGugCGG-CaGuGCGCGCACgaCG- -5'
29372 3' -60 NC_006151.1 + 112218 0.66 0.751268
Target:  5'- gGGCGCAgucgcgcuCGCuCGUCGC-CGCcgccaggcGCUGCg -3'
miRNA:   3'- -CCGCGU--------GCG-GCAGUGcGCGca------CGACG- -5'
29372 3' -60 NC_006151.1 + 76647 0.66 0.741877
Target:  5'- uGGCG-ACGaCCGcgugCGgGCGCGUG-UGCg -3'
miRNA:   3'- -CCGCgUGC-GGCa---GUgCGCGCACgACG- -5'
29372 3' -60 NC_006151.1 + 95277 0.66 0.741877
Target:  5'- uGGCGUugacgaagacgGCGgCGaCGCGCGCG-GCccgGCg -3'
miRNA:   3'- -CCGCG-----------UGCgGCaGUGCGCGCaCGa--CG- -5'
29372 3' -60 NC_006151.1 + 39772 0.66 0.741877
Target:  5'- gGGCGC-CGCCuUCGggcacCGCGCGgccaaccGCUGg -3'
miRNA:   3'- -CCGCGuGCGGcAGU-----GCGCGCa------CGACg -5'
29372 3' -60 NC_006151.1 + 104824 0.66 0.741877
Target:  5'- cGGCGCGCGaCGgccUCGC-CGCG-GCggagGCg -3'
miRNA:   3'- -CCGCGUGCgGC---AGUGcGCGCaCGa---CG- -5'
29372 3' -60 NC_006151.1 + 99268 0.66 0.748461
Target:  5'- gGGCuucaCGCGCCGccacugcgaccuccUCgaGCGCGCcGUGCUGg -3'
miRNA:   3'- -CCGc---GUGCGGC--------------AG--UGCGCG-CACGACg -5'
29372 3' -60 NC_006151.1 + 31643 0.66 0.751268
Target:  5'- aGCGCACGCgGgCGCGCGgGgagGgaGg -3'
miRNA:   3'- cCGCGUGCGgCaGUGCGCgCa--CgaCg -5'
29372 3' -60 NC_006151.1 + 4864 0.66 0.751268
Target:  5'- cGGCGC-CGCCGUaGCGgaCGCG-GCcGUc -3'
miRNA:   3'- -CCGCGuGCGGCAgUGC--GCGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 63249 0.66 0.751268
Target:  5'- aGGUcaGCACcucgccggaGCuCGUCACGaCGCG-GUUGCu -3'
miRNA:   3'- -CCG--CGUG---------CG-GCAGUGC-GCGCaCGACG- -5'
29372 3' -60 NC_006151.1 + 75277 0.66 0.751268
Target:  5'- uGGCGCAgCGCCGcCA-GCGUG-GCg-- -3'
miRNA:   3'- -CCGCGU-GCGGCaGUgCGCGCaCGacg -5'
29372 3' -60 NC_006151.1 + 105285 0.66 0.751268
Target:  5'- gGGCGCGCGCgCGgcCGCGC-CG-GC-GCc -3'
miRNA:   3'- -CCGCGUGCG-GCa-GUGCGcGCaCGaCG- -5'
29372 3' -60 NC_006151.1 + 110962 0.66 0.751268
Target:  5'- cGGCGgGCGUCcucCACGauCGCGUGC-GCc -3'
miRNA:   3'- -CCGCgUGCGGca-GUGC--GCGCACGaCG- -5'
29372 3' -60 NC_006151.1 + 10621 0.67 0.713196
Target:  5'- cGCGCGC-CCGcgUGCGCuCGUGCcgGCg -3'
miRNA:   3'- cCGCGUGcGGCa-GUGCGcGCACGa-CG- -5'
29372 3' -60 NC_006151.1 + 25120 0.67 0.713196
Target:  5'- aGCGCugGgCGUgGaCGCGCGacaacccccUGCUGa -3'
miRNA:   3'- cCGCGugCgGCAgU-GCGCGC---------ACGACg -5'
29372 3' -60 NC_006151.1 + 39471 0.67 0.713196
Target:  5'- uGCGCugGCCcggGUgccgcgagcucCGCGCGgcCGUGCUGg -3'
miRNA:   3'- cCGCGugCGG---CA-----------GUGCGC--GCACGACg -5'
29372 3' -60 NC_006151.1 + 80671 0.67 0.713196
Target:  5'- cGCGCACGCagagaGUCugGguuCGCG-GCccgGCg -3'
miRNA:   3'- cCGCGUGCGg----CAGugC---GCGCaCGa--CG- -5'
29372 3' -60 NC_006151.1 + 116182 0.67 0.713196
Target:  5'- cGGaucuGCugGCCGUCguagauggcGCGCGCGaGCgugauguugGCg -3'
miRNA:   3'- -CCg---CGugCGGCAG---------UGCGCGCaCGa--------CG- -5'
29372 3' -60 NC_006151.1 + 122494 0.67 0.713196
Target:  5'- gGGCgagacgGCGCGCCG--GCGCGCGgacGC-GCu -3'
miRNA:   3'- -CCG------CGUGCGGCagUGCGCGCa--CGaCG- -5'
29372 3' -60 NC_006151.1 + 73764 0.67 0.713196
Target:  5'- uGGgGCACGCagggCACGUGCuggGCgGCg -3'
miRNA:   3'- -CCgCGUGCGgca-GUGCGCGca-CGaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.