Results 21 - 26 of 26 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 29373 | 3' | -54.5 | NC_006151.1 | + | 3255 | 0.66 | 0.935486 |
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Target: 5'- gCgGAGcgGGGCg-CCGCG-GcGCGCGg -3' miRNA: 3'- -GgUUCuaCCCGaaGGCGCaCaCGUGC- -5' |
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| 29373 | 3' | -54.5 | NC_006151.1 | + | 10936 | 0.66 | 0.930404 |
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Target: 5'- gCCgAGGGUGGGCgcgcgugUCCGUGUGagaGUuuACGg -3' miRNA: 3'- -GG-UUCUACCCGa------AGGCGCACa--CG--UGC- -5' |
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| 29373 | 3' | -54.5 | NC_006151.1 | + | 117117 | 0.67 | 0.925079 |
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Target: 5'- aCCAGGccGGcGCacaccgUCuCGCGgagGUGCGCGa -3' miRNA: 3'- -GGUUCuaCC-CGa-----AG-GCGCa--CACGUGC- -5' |
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| 29373 | 3' | -54.5 | NC_006151.1 | + | 117584 | 0.67 | 0.925079 |
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Target: 5'- -gAGGAUGGGC---CGCGUG-GCGCc -3' miRNA: 3'- ggUUCUACCCGaagGCGCACaCGUGc -5' |
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| 29373 | 3' | -54.5 | NC_006151.1 | + | 89465 | 0.67 | 0.919511 |
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Target: 5'- aCCAGca-GGGC--CCGCGUcacGUGCGCGg -3' miRNA: 3'- -GGUUcuaCCCGaaGGCGCA---CACGUGC- -5' |
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| 29373 | 3' | -54.5 | NC_006151.1 | + | 137695 | 1.1 | 0.003447 |
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Target: 5'- gCCAAGAUGGGCUUCCGCGUGUGCACGc -3' miRNA: 3'- -GGUUCUACCCGAAGGCGCACACGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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