Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29374 | 5' | -52.7 | NC_006151.1 | + | 86276 | 0.68 | 0.941416 |
Target: 5'- cGACCGcgGCcccuUCuUCCUCGGCGUCGuCa -3' miRNA: 3'- -CUGGU--UGu---AGcAGGAGCUGCAGCuGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 86225 | 0.67 | 0.953224 |
Target: 5'- cGACCAccgcccgcgcugcgACAUCGgcgCCgugcuggcCGugGUCGACg -3' miRNA: 3'- -CUGGU--------------UGUAGCa--GGa-------GCugCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 85467 | 0.68 | 0.941416 |
Target: 5'- cGGCCAgaACcUCuUCCUCGGCGagGACg -3' miRNA: 3'- -CUGGU--UGuAGcAGGAGCUGCagCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 79782 | 0.68 | 0.936593 |
Target: 5'- cGGCCGG-AUCGcggCCUCGGCG-CGGCa -3' miRNA: 3'- -CUGGUUgUAGCa--GGAGCUGCaGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 79249 | 0.66 | 0.97149 |
Target: 5'- aGACac-CAUCGUCC-CGGCGcggucUCGACg -3' miRNA: 3'- -CUGguuGUAGCAGGaGCUGC-----AGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 65990 | 0.69 | 0.902489 |
Target: 5'- cGGCCGcgaGCG-CGUCCUCcgcGGCGUCGAg- -3' miRNA: 3'- -CUGGU---UGUaGCAGGAG---CUGCAGCUga -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 65527 | 0.66 | 0.979192 |
Target: 5'- cGGCCAGCAgCGUcaugacggCCUCGugGcCGAa- -3' miRNA: 3'- -CUGGUUGUaGCA--------GGAGCugCaGCUga -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 64215 | 0.66 | 0.979192 |
Target: 5'- -uCCGGCGUgGgcgCCUCGGCGUacagggccgCGACg -3' miRNA: 3'- cuGGUUGUAgCa--GGAGCUGCA---------GCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 62078 | 0.83 | 0.255815 |
Target: 5'- uGACgAACGUCGUCCUCGGCGcggUCGGCc -3' miRNA: 3'- -CUGgUUGUAGCAGGAGCUGC---AGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 61814 | 0.69 | 0.902489 |
Target: 5'- -cCCAGCGUgGUgCUcuacgCGGCGUCGACg -3' miRNA: 3'- cuGGUUGUAgCAgGA-----GCUGCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 59810 | 0.67 | 0.96533 |
Target: 5'- uGGCCAccucGCcgCuGUCCgCGAUGUCGGCc -3' miRNA: 3'- -CUGGU----UGuaG-CAGGaGCUGCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 59762 | 0.72 | 0.80948 |
Target: 5'- --gCAGC-UCGUCCUCGggcACGUCGGCc -3' miRNA: 3'- cugGUUGuAGCAGGAGC---UGCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 59417 | 0.67 | 0.96533 |
Target: 5'- cGAgCAGCAgCGgcgCCagcUCGGCGUCGGCc -3' miRNA: 3'- -CUgGUUGUaGCa--GG---AGCUGCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 58458 | 0.69 | 0.920648 |
Target: 5'- cGCgCGGCGUCGcggUCCacgaCGACGUCGGCg -3' miRNA: 3'- cUG-GUUGUAGC---AGGa---GCUGCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 58368 | 0.66 | 0.97682 |
Target: 5'- cGCC-GCGUCGUgaUCUCGACGgagagcgCGGCg -3' miRNA: 3'- cUGGuUGUAGCA--GGAGCUGCa------GCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 51878 | 0.66 | 0.98339 |
Target: 5'- -uCCAGCuccagGUCGUCCaCGAC-UCGACa -3' miRNA: 3'- cuGGUUG-----UAGCAGGaGCUGcAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 49097 | 0.72 | 0.77252 |
Target: 5'- uGGCCAACAUCuucgcggcgGUCCgggCGACGUaccCGACg -3' miRNA: 3'- -CUGGUUGUAG---------CAGGa--GCUGCA---GCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 38366 | 0.67 | 0.958291 |
Target: 5'- cGGCCu-CGUCGUCCcagcgcCGGCGcCGGCg -3' miRNA: 3'- -CUGGuuGUAGCAGGa-----GCUGCaGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 37385 | 0.66 | 0.974255 |
Target: 5'- cGGCCGACGgccgCGUCCgcuacggCGGCGcCGGg- -3' miRNA: 3'- -CUGGUUGUa---GCAGGa------GCUGCaGCUga -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 26868 | 0.84 | 0.220701 |
Target: 5'- aGCCGGCGUCGUCCucgUCGACGUCGcACUc -3' miRNA: 3'- cUGGUUGUAGCAGG---AGCUGCAGC-UGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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