Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29374 | 5' | -52.7 | NC_006151.1 | + | 20593 | 0.71 | 0.835489 |
Target: 5'- gGGCCGGCAcUCGUCCgcgGACGaCGGCg -3' miRNA: 3'- -CUGGUUGU-AGCAGGag-CUGCaGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 18438 | 0.68 | 0.945994 |
Target: 5'- cGGCgGGCGUCGcccgccUCCUCGuCGUCGuCg -3' miRNA: 3'- -CUGgUUGUAGC------AGGAGCuGCAGCuGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 18361 | 0.71 | 0.818328 |
Target: 5'- uGCUGAacUCGUCCUCGGCGUCcaGGCUc -3' miRNA: 3'- cUGGUUguAGCAGGAGCUGCAG--CUGA- -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 17025 | 0.67 | 0.957157 |
Target: 5'- uGGCCGGgAUcccggcgacgaucaCGUCCagGGCGUCGGCg -3' miRNA: 3'- -CUGGUUgUA--------------GCAGGagCUGCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 14201 | 0.75 | 0.610097 |
Target: 5'- -gUCGGCAUCGgCCUCGACGaCGACg -3' miRNA: 3'- cuGGUUGUAGCaGGAGCUGCaGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 4821 | 0.67 | 0.967584 |
Target: 5'- uGGCgGACGUCGUCCUCGucccagagccccucGCGggagucccCGGCg -3' miRNA: 3'- -CUGgUUGUAGCAGGAGC--------------UGCa-------GCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 4546 | 0.7 | 0.882166 |
Target: 5'- cGGCCAugG-CGUCCcCGAUGUgCGGCa -3' miRNA: 3'- -CUGGUugUaGCAGGaGCUGCA-GCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 3201 | 0.78 | 0.479074 |
Target: 5'- cACCAcgcGCA-CGUCCUCGGgGUCGGCUa -3' miRNA: 3'- cUGGU---UGUaGCAGGAGCUgCAGCUGA- -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 3131 | 0.67 | 0.958291 |
Target: 5'- aGGCCGggcGCGgggCGcCCUCGGCGggcUCGGCg -3' miRNA: 3'- -CUGGU---UGUa--GCaGGAGCUGC---AGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 2323 | 0.75 | 0.630888 |
Target: 5'- cACCAGCGgggCGgCCUCGGCGUCGGg- -3' miRNA: 3'- cUGGUUGUa--GCaGGAGCUGCAGCUga -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 2280 | 0.67 | 0.961924 |
Target: 5'- cGGCCGGCGgggCGcCCgCGGCGgCGACg -3' miRNA: 3'- -CUGGUUGUa--GCaGGaGCUGCaGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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