Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29374 | 5' | -52.7 | NC_006151.1 | + | 79249 | 0.66 | 0.97149 |
Target: 5'- aGACac-CAUCGUCC-CGGCGcggucUCGACg -3' miRNA: 3'- -CUGguuGUAGCAGGaGCUGC-----AGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 111656 | 0.66 | 0.97149 |
Target: 5'- cGGCCGugAUCGcggCCaggggGGCGUCGGCg -3' miRNA: 3'- -CUGGUugUAGCa--GGag---CUGCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 114852 | 0.66 | 0.974255 |
Target: 5'- cGACCAcguagGCGggGUCCUCGGCcagGUCG-CUg -3' miRNA: 3'- -CUGGU-----UGUagCAGGAGCUG---CAGCuGA- -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 139934 | 0.66 | 0.974255 |
Target: 5'- cGCCGugGgccgcCGUCCUCGAguUCGGCg -3' miRNA: 3'- cUGGUugUa----GCAGGAGCUgcAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 37385 | 0.66 | 0.974255 |
Target: 5'- cGGCCGACGgccgCGUCCgcuacggCGGCGcCGGg- -3' miRNA: 3'- -CUGGUUGUa---GCAGGa------GCUGCaGCUga -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 89233 | 0.66 | 0.97682 |
Target: 5'- cGCCGcccccguuggGCGUCGUgucgagcgCCgUCGugGUCGACg -3' miRNA: 3'- cUGGU----------UGUAGCA--------GG-AGCugCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 58368 | 0.66 | 0.97682 |
Target: 5'- cGCC-GCGUCGUgaUCUCGACGgagagcgCGGCg -3' miRNA: 3'- cUGGuUGUAGCA--GGAGCUGCa------GCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 64215 | 0.66 | 0.979192 |
Target: 5'- -uCCGGCGUgGgcgCCUCGGCGUacagggccgCGACg -3' miRNA: 3'- cuGGUUGUAgCa--GGAGCUGCA---------GCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 65527 | 0.66 | 0.979192 |
Target: 5'- cGGCCAGCAgCGUcaugacggCCUCGugGcCGAa- -3' miRNA: 3'- -CUGGUUGUaGCA--------GGAGCugCaGCUga -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 127572 | 0.66 | 0.981379 |
Target: 5'- cGCCGGCGccUCGUUCgccguccccgUCGGgGUCGACg -3' miRNA: 3'- cUGGUUGU--AGCAGG----------AGCUgCAGCUGa -5' |
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29374 | 5' | -52.7 | NC_006151.1 | + | 51878 | 0.66 | 0.98339 |
Target: 5'- -uCCAGCuccagGUCGUCCaCGAC-UCGACa -3' miRNA: 3'- cuGGUUG-----UAGCAGGaGCUGcAGCUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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