miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 5' -52.7 NC_006151.1 + 17025 0.67 0.957157
Target:  5'- uGGCCGGgAUcccggcgacgaucaCGUCCagGGCGUCGGCg -3'
miRNA:   3'- -CUGGUUgUA--------------GCAGGagCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 3131 0.67 0.958291
Target:  5'- aGGCCGggcGCGgggCGcCCUCGGCGggcUCGGCg -3'
miRNA:   3'- -CUGGU---UGUa--GCaGGAGCUGC---AGCUGa -5'
29374 5' -52.7 NC_006151.1 + 38366 0.67 0.958291
Target:  5'- cGGCCu-CGUCGUCCcagcgcCGGCGcCGGCg -3'
miRNA:   3'- -CUGGuuGUAGCAGGa-----GCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 2280 0.67 0.961924
Target:  5'- cGGCCGGCGgggCGcCCgCGGCGgCGACg -3'
miRNA:   3'- -CUGGUUGUa--GCaGGaGCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 125487 0.67 0.965
Target:  5'- cGGCCAGCG-CGU-CUCGGCGcgcaugcUCGGCg -3'
miRNA:   3'- -CUGGUUGUaGCAgGAGCUGC-------AGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59810 0.67 0.96533
Target:  5'- uGGCCAccucGCcgCuGUCCgCGAUGUCGGCc -3'
miRNA:   3'- -CUGGU----UGuaG-CAGGaGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 96662 0.67 0.96533
Target:  5'- gGGCCcgGGCGaCGUCCUCGgggcaggcgGCGUCGAg- -3'
miRNA:   3'- -CUGG--UUGUaGCAGGAGC---------UGCAGCUga -5'
29374 5' -52.7 NC_006151.1 + 59417 0.67 0.96533
Target:  5'- cGAgCAGCAgCGgcgCCagcUCGGCGUCGGCc -3'
miRNA:   3'- -CUgGUUGUaGCa--GG---AGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 135282 0.67 0.96533
Target:  5'- --aCGAgGUCGUCCgugUCcGCGUCGACg -3'
miRNA:   3'- cugGUUgUAGCAGG---AGcUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 122891 0.67 0.966631
Target:  5'- gGGCCAACcgCGacgcccucgagcgccUCCUCGAgGgcggCGACg -3'
miRNA:   3'- -CUGGUUGuaGC---------------AGGAGCUgCa---GCUGa -5'
29374 5' -52.7 NC_006151.1 + 51878 0.66 0.98339
Target:  5'- -uCCAGCuccagGUCGUCCaCGAC-UCGACa -3'
miRNA:   3'- cuGGUUG-----UAGCAGGaGCUGcAGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.