miRNA display CGI


Results 41 - 51 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 5' -52.7 NC_006151.1 + 117865 0.76 0.599723
Target:  5'- cGCCGACGUCGcguucgccCCUCGGCGcCGACa -3'
miRNA:   3'- cUGGUUGUAGCa-------GGAGCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 119484 0.68 0.945994
Target:  5'- uGGCCGGCAg---CCUCGACGcCGAg- -3'
miRNA:   3'- -CUGGUUGUagcaGGAGCUGCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 122891 0.67 0.966631
Target:  5'- gGGCCAACcgCGacgcccucgagcgccUCCUCGAgGgcggCGACg -3'
miRNA:   3'- -CUGGUUGuaGC---------------AGGAGCUgCa---GCUGa -5'
29374 5' -52.7 NC_006151.1 + 125487 0.67 0.965
Target:  5'- cGGCCAGCG-CGU-CUCGGCGcgcaugcUCGGCg -3'
miRNA:   3'- -CUGGUUGUaGCAgGAGCUGC-------AGCUGa -5'
29374 5' -52.7 NC_006151.1 + 127572 0.66 0.981379
Target:  5'- cGCCGGCGccUCGUUCgccguccccgUCGGgGUCGACg -3'
miRNA:   3'- cUGGUUGU--AGCAGG----------AGCUgCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 131790 0.68 0.949055
Target:  5'- cGCCGcCGUCGucagcgcgccauccUCCUCGGCcUCGGCUa -3'
miRNA:   3'- cUGGUuGUAGC--------------AGGAGCUGcAGCUGA- -5'
29374 5' -52.7 NC_006151.1 + 135034 0.69 0.91484
Target:  5'- gGGCC-GCGUCGUCCUCGGgG-CGGu- -3'
miRNA:   3'- -CUGGuUGUAGCAGGAGCUgCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 135282 0.67 0.96533
Target:  5'- --aCGAgGUCGUCCgugUCcGCGUCGACg -3'
miRNA:   3'- cugGUUgUAGCAGG---AGcUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 135517 0.72 0.80948
Target:  5'- aGGCCAuCA-CGUCCUCGGCGgCGAg- -3'
miRNA:   3'- -CUGGUuGUaGCAGGAGCUGCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 137231 1.07 0.008345
Target:  5'- uGACCAACAUCGUCCUCGACGUCGACUu -3'
miRNA:   3'- -CUGGUUGUAGCAGGAGCUGCAGCUGA- -5'
29374 5' -52.7 NC_006151.1 + 139934 0.66 0.974255
Target:  5'- cGCCGugGgccgcCGUCCUCGAguUCGGCg -3'
miRNA:   3'- cUGGUugUa----GCAGGAGCUgcAGCUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.