miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29374 5' -52.7 NC_006151.1 + 86276 0.68 0.941416
Target:  5'- cGACCGcgGCcccuUCuUCCUCGGCGUCGuCa -3'
miRNA:   3'- -CUGGU--UGu---AGcAGGAGCUGCAGCuGa -5'
29374 5' -52.7 NC_006151.1 + 86225 0.67 0.953224
Target:  5'- cGACCAccgcccgcgcugcgACAUCGgcgCCgugcuggcCGugGUCGACg -3'
miRNA:   3'- -CUGGU--------------UGUAGCa--GGa-------GCugCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 85467 0.68 0.941416
Target:  5'- cGGCCAgaACcUCuUCCUCGGCGagGACg -3'
miRNA:   3'- -CUGGU--UGuAGcAGGAGCUGCagCUGa -5'
29374 5' -52.7 NC_006151.1 + 79782 0.68 0.936593
Target:  5'- cGGCCGG-AUCGcggCCUCGGCG-CGGCa -3'
miRNA:   3'- -CUGGUUgUAGCa--GGAGCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 79249 0.66 0.97149
Target:  5'- aGACac-CAUCGUCC-CGGCGcggucUCGACg -3'
miRNA:   3'- -CUGguuGUAGCAGGaGCUGC-----AGCUGa -5'
29374 5' -52.7 NC_006151.1 + 65990 0.69 0.902489
Target:  5'- cGGCCGcgaGCG-CGUCCUCcgcGGCGUCGAg- -3'
miRNA:   3'- -CUGGU---UGUaGCAGGAG---CUGCAGCUga -5'
29374 5' -52.7 NC_006151.1 + 65527 0.66 0.979192
Target:  5'- cGGCCAGCAgCGUcaugacggCCUCGugGcCGAa- -3'
miRNA:   3'- -CUGGUUGUaGCA--------GGAGCugCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 64215 0.66 0.979192
Target:  5'- -uCCGGCGUgGgcgCCUCGGCGUacagggccgCGACg -3'
miRNA:   3'- cuGGUUGUAgCa--GGAGCUGCA---------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 62078 0.83 0.255815
Target:  5'- uGACgAACGUCGUCCUCGGCGcggUCGGCc -3'
miRNA:   3'- -CUGgUUGUAGCAGGAGCUGC---AGCUGa -5'
29374 5' -52.7 NC_006151.1 + 61814 0.69 0.902489
Target:  5'- -cCCAGCGUgGUgCUcuacgCGGCGUCGACg -3'
miRNA:   3'- cuGGUUGUAgCAgGA-----GCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59810 0.67 0.96533
Target:  5'- uGGCCAccucGCcgCuGUCCgCGAUGUCGGCc -3'
miRNA:   3'- -CUGGU----UGuaG-CAGGaGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59762 0.72 0.80948
Target:  5'- --gCAGC-UCGUCCUCGggcACGUCGGCc -3'
miRNA:   3'- cugGUUGuAGCAGGAGC---UGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 59417 0.67 0.96533
Target:  5'- cGAgCAGCAgCGgcgCCagcUCGGCGUCGGCc -3'
miRNA:   3'- -CUgGUUGUaGCa--GG---AGCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 58458 0.69 0.920648
Target:  5'- cGCgCGGCGUCGcggUCCacgaCGACGUCGGCg -3'
miRNA:   3'- cUG-GUUGUAGC---AGGa---GCUGCAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 58368 0.66 0.97682
Target:  5'- cGCC-GCGUCGUgaUCUCGACGgagagcgCGGCg -3'
miRNA:   3'- cUGGuUGUAGCA--GGAGCUGCa------GCUGa -5'
29374 5' -52.7 NC_006151.1 + 51878 0.66 0.98339
Target:  5'- -uCCAGCuccagGUCGUCCaCGAC-UCGACa -3'
miRNA:   3'- cuGGUUG-----UAGCAGGaGCUGcAGCUGa -5'
29374 5' -52.7 NC_006151.1 + 49097 0.72 0.77252
Target:  5'- uGGCCAACAUCuucgcggcgGUCCgggCGACGUaccCGACg -3'
miRNA:   3'- -CUGGUUGUAG---------CAGGa--GCUGCA---GCUGa -5'
29374 5' -52.7 NC_006151.1 + 38366 0.67 0.958291
Target:  5'- cGGCCu-CGUCGUCCcagcgcCGGCGcCGGCg -3'
miRNA:   3'- -CUGGuuGUAGCAGGa-----GCUGCaGCUGa -5'
29374 5' -52.7 NC_006151.1 + 37385 0.66 0.974255
Target:  5'- cGGCCGACGgccgCGUCCgcuacggCGGCGcCGGg- -3'
miRNA:   3'- -CUGGUUGUa---GCAGGa------GCUGCaGCUga -5'
29374 5' -52.7 NC_006151.1 + 26868 0.84 0.220701
Target:  5'- aGCCGGCGUCGUCCucgUCGACGUCGcACUc -3'
miRNA:   3'- cUGGUUGUAGCAGG---AGCUGCAGC-UGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.