miRNA display CGI


Results 81 - 100 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 102238 0.73 0.1857
Target:  5'- cGUGCGCCgUCGCCgCGcucuucgaGCCcauccUGGGCGCg -3'
miRNA:   3'- -CGCGCGG-AGCGGgGC--------CGGu----ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 133223 0.73 0.1857
Target:  5'- gGCGUGCgUCGCgCCGcGCCA-GGGCa- -3'
miRNA:   3'- -CGCGCGgAGCGgGGC-CGGUaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 69505 0.73 0.190115
Target:  5'- cGCGcCGCCUccucCGCCgCCGcGCCGcgcgaGGGCGCc -3'
miRNA:   3'- -CGC-GCGGA----GCGG-GGC-CGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 101544 0.73 0.190115
Target:  5'- gGCGCGCCUgCGCCCggCGGaCGUGuacGCGCa -3'
miRNA:   3'- -CGCGCGGA-GCGGG--GCCgGUACc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 39001 0.73 0.190115
Target:  5'- cGCGCGCCgcggCGCCCCGcuccGCCGcc-GCGCc -3'
miRNA:   3'- -CGCGCGGa---GCGGGGC----CGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 22046 0.73 0.191906
Target:  5'- uGCGCGCaCcCGUCCgcgaugcgguaccaGGCCAcgUGGGCGCg -3'
miRNA:   3'- -CGCGCG-GaGCGGGg-------------CCGGU--ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 98631 0.72 0.194166
Target:  5'- uGCGcCGCCUUcgacgagGCCCUGGC---GGGCGCg -3'
miRNA:   3'- -CGC-GCGGAG-------CGGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 45562 0.72 0.194166
Target:  5'- gGCGCGCCcgggccaUCGUCCCGGgacggcCCGaGGGgGCg -3'
miRNA:   3'- -CGCGCGG-------AGCGGGGCC------GGUaCCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 54595 0.72 0.194621
Target:  5'- cGUGUGCCUCggcgugGUCCCGGUgCGccGGGCGCg -3'
miRNA:   3'- -CGCGCGGAG------CGGGGCCG-GUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 84634 0.72 0.194621
Target:  5'- cGCgGCGCUggacaaCGCCauGGCCGcGGGCGCg -3'
miRNA:   3'- -CG-CGCGGa-----GCGGggCCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 81389 0.72 0.194621
Target:  5'- cCGCGCCgcggCGCCCagguuGGCCA-GGGUGg -3'
miRNA:   3'- cGCGCGGa---GCGGGg----CCGGUaCCCGCg -5'
29375 5' -65.6 NC_006151.1 + 30568 0.72 0.199221
Target:  5'- aCGCGCCgu-CCCgCGGCCccgucGGGCGCa -3'
miRNA:   3'- cGCGCGGagcGGG-GCCGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 138502 0.72 0.199221
Target:  5'- cGgGCGCCcgcugcaccuccUCGUCCUcggGGUgAUGGGCGCg -3'
miRNA:   3'- -CgCGCGG------------AGCGGGG---CCGgUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 138717 0.72 0.203915
Target:  5'- uGCGCGCCgCGCgCgGGUCGUGuacGCGCg -3'
miRNA:   3'- -CGCGCGGaGCGgGgCCGGUACc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 98339 0.72 0.203915
Target:  5'- cGCGgGCCgcgagaCGCCCgCGGgCGugcgcgggcucUGGGCGCg -3'
miRNA:   3'- -CGCgCGGa-----GCGGG-GCCgGU-----------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 26374 0.72 0.203915
Target:  5'- gGCGCGCgUC-CCCCGGCgGgcGGCGUc -3'
miRNA:   3'- -CGCGCGgAGcGGGGCCGgUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 121345 0.72 0.203915
Target:  5'- uGCGCGaCCUCGag--GGCCAgacGGGCGCg -3'
miRNA:   3'- -CGCGC-GGAGCggggCCGGUa--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 121477 0.72 0.206778
Target:  5'- -aGCGCC-CGCCCCcggaGGacgaccuguuugaCAUGGGCGCc -3'
miRNA:   3'- cgCGCGGaGCGGGG----CCg------------GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 65512 0.72 0.208705
Target:  5'- aGCGCGCCUCcUCCgCGGCCAgcaGCGUc -3'
miRNA:   3'- -CGCGCGGAGcGGG-GCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 84334 0.72 0.208705
Target:  5'- uGCGCgGCCUCGCCgaguacgucgCCGGCCcgcGGCGg -3'
miRNA:   3'- -CGCG-CGGAGCGG----------GGCCGGuacCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.