Results 61 - 80 of 468 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29375 | 5' | -65.6 | NC_006151.1 | + | 103029 | 0.66 | 0.494927 |
Target: 5'- -aGCGCCUCgggGCCugguucgcgcugCUGGCCGa-GGCGCa -3' miRNA: 3'- cgCGCGGAG---CGG------------GGCCGGUacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 100193 | 0.66 | 0.494927 |
Target: 5'- cGgGCGaCCUgcuggacucgaUGgCCaCGGCCGcGGGCGCc -3' miRNA: 3'- -CgCGC-GGA-----------GCgGG-GCCGGUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 90469 | 0.66 | 0.485954 |
Target: 5'- aGCGCGCagCGCCagcaUGGCUcgccgGGGCGg -3' miRNA: 3'- -CGCGCGgaGCGGg---GCCGGua---CCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 75132 | 0.66 | 0.485954 |
Target: 5'- gGCG-GCCggCGgCgCGGCCcagcgcGGGCGCa -3' miRNA: 3'- -CGCgCGGa-GCgGgGCCGGua----CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 37866 | 0.66 | 0.485954 |
Target: 5'- cCGCGCCgCGgacCCCCGcGCCG-GGGagGCg -3' miRNA: 3'- cGCGCGGaGC---GGGGC-CGGUaCCCg-CG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 20754 | 0.66 | 0.485954 |
Target: 5'- gGCGCGCCUCcaCCgCGGCgGacgcgcgccGGGCGa -3' miRNA: 3'- -CGCGCGGAGc-GGgGCCGgUa--------CCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 17960 | 0.66 | 0.485954 |
Target: 5'- -gGCGCC-CGCCugCCGGCguccCAcGcGGCGCa -3' miRNA: 3'- cgCGCGGaGCGG--GGCCG----GUaC-CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 10863 | 0.66 | 0.485954 |
Target: 5'- ----cCCUCGCCCCGGCCccccggcuuGGUGCc -3' miRNA: 3'- cgcgcGGAGCGGGGCCGGuac------CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 2165 | 0.66 | 0.485954 |
Target: 5'- cCGU-CCUCGCCggggCCGGCCcc-GGCGCc -3' miRNA: 3'- cGCGcGGAGCGG----GGCCGGuacCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 134273 | 0.66 | 0.485954 |
Target: 5'- -gGCGauuguaGCCCCgGGCCGcccacGGGCGCa -3' miRNA: 3'- cgCGCggag--CGGGG-CCGGUa----CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 114169 | 0.66 | 0.485954 |
Target: 5'- cGCGCGgcCCUCGUgCUGGCCuac-GUGCa -3' miRNA: 3'- -CGCGC--GGAGCGgGGCCGGuaccCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 70896 | 0.66 | 0.485954 |
Target: 5'- cGCGCGCUgcgucgugCGCugCCUGGCgcgCGUGcuGGCGCu -3' miRNA: 3'- -CGCGCGGa-------GCG--GGGCCG---GUAC--CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 34574 | 0.66 | 0.494927 |
Target: 5'- cGCuCGUCUCuCCgaCCGGCUG-GGGCGCc -3' miRNA: 3'- -CGcGCGGAGcGG--GGCCGGUaCCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 23915 | 0.66 | 0.494927 |
Target: 5'- cGCGgGCCcgacggGCCgCCGGUCGUcguggacgGGGUGCc -3' miRNA: 3'- -CGCgCGGag----CGG-GGCCGGUA--------CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 8258 | 0.66 | 0.494927 |
Target: 5'- gGCGCGCCgggaCGCCCCu-CCggGGGaaagagugucccCGCg -3' miRNA: 3'- -CGCGCGGa---GCGGGGccGGuaCCC------------GCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 139167 | 0.66 | 0.494026 |
Target: 5'- cCGCGCCcucguguggaucuUUGUgCUGGCgGUcgGGGCGCu -3' miRNA: 3'- cGCGCGG-------------AGCGgGGCCGgUA--CCCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 71687 | 0.66 | 0.494026 |
Target: 5'- cGCGUGCCgagcgugUCGCCCagccgcgaGGCCGa-GGCGa -3' miRNA: 3'- -CGCGCGG-------AGCGGGg-------CCGGUacCCGCg -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 66554 | 0.66 | 0.485954 |
Target: 5'- cGCGCGgC-CGCgCC-GCCGUGgacccGGCGCu -3' miRNA: 3'- -CGCGCgGaGCGgGGcCGGUAC-----CCGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 100584 | 0.66 | 0.485954 |
Target: 5'- gGC-CGCCacCGUCCugCGGcCCGUGGaGCGCu -3' miRNA: 3'- -CGcGCGGa-GCGGG--GCC-GGUACC-CGCG- -5' |
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29375 | 5' | -65.6 | NC_006151.1 | + | 98382 | 0.66 | 0.485954 |
Target: 5'- cGCGCGCUgCG-CCUGGCCugccGCGCc -3' miRNA: 3'- -CGCGCGGaGCgGGGCCGGuaccCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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