miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 136755 1.11 0.000292
Target:  5'- cGCGCGCCUCGCCCCGGCCAUGGGCGCc -3'
miRNA:   3'- -CGCGCGGAGCGGGGCCGGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 64614 0.85 0.024461
Target:  5'- aGCgGCGCCgCGCCgCCGGCCGcgGGGCGCg -3'
miRNA:   3'- -CG-CGCGGaGCGG-GGCCGGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99536 0.83 0.03598
Target:  5'- cCGCGCC-CGCCCaCGGagcaCGUGGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGG-GCCg---GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 76795 0.81 0.045295
Target:  5'- -gGCGCCguacagCGCCCCGGCgAgggcGGGCGCg -3'
miRNA:   3'- cgCGCGGa-----GCGGGGCCGgUa---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 8306 0.8 0.056951
Target:  5'- cCGCGUCcCGCCCCGaGCCcccgGGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGGGC-CGGua--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 49142 0.8 0.059912
Target:  5'- cCGCGCC-CGCCCaCGGCUGccuggaggccUGGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGG-GCCGGU----------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 7028 0.8 0.055383
Target:  5'- gGCGgccaucuCGgCUCGCCCgGGCCaAUGGGCGCg -3'
miRNA:   3'- -CGC-------GCgGAGCGGGgCCGG-UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130101 0.8 0.056519
Target:  5'- cGCGCuCCUCgGCCgugaagcccggguuCUGGCCGUGGGCGCg -3'
miRNA:   3'- -CGCGcGGAG-CGG--------------GGCCGGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 23403 0.79 0.066286
Target:  5'- cCGCGCCagCGCUgguggucgCCGGCCGUGGGgGCg -3'
miRNA:   3'- cGCGCGGa-GCGG--------GGCCGGUACCCgCG- -5'
29375 5' -65.6 NC_006151.1 + 49582 0.79 0.071491
Target:  5'- cGCGCucGCCggCGCCCCGGCCAgc-GCGCu -3'
miRNA:   3'- -CGCG--CGGa-GCGGGGCCGGUaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 16905 0.78 0.077088
Target:  5'- cCGCGCC-CGCCCCGGCgcc-GGCGCa -3'
miRNA:   3'- cGCGCGGaGCGGGGCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 69215 0.78 0.085206
Target:  5'- cCGCGCCggcCGCCCCaGGCgGUGGaGUGCu -3'
miRNA:   3'- cGCGCGGa--GCGGGG-CCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 130403 0.78 0.079045
Target:  5'- -aGCGCCUCGCCCgCGaGCgc-GGGCGCg -3'
miRNA:   3'- cgCGCGGAGCGGG-GC-CGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58240 0.78 0.079045
Target:  5'- cGCGCGCCgccaCGCgCCGGCCcgcGGGcCGCa -3'
miRNA:   3'- -CGCGCGGa---GCGgGGCCGGua-CCC-GCG- -5'
29375 5' -65.6 NC_006151.1 + 63808 0.78 0.079045
Target:  5'- -aGCGCCUCG-CCgGGCCccgGGGCGCc -3'
miRNA:   3'- cgCGCGGAGCgGGgCCGGua-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 71051 0.77 0.088235
Target:  5'- cGCGCGUCgUCGCcgaCCCGGCCGUGgucuucuaccaccacGGCGCc -3'
miRNA:   3'- -CGCGCGG-AGCG---GGGCCGGUAC---------------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58392 0.77 0.094134
Target:  5'- -aGCGCggCGCagCCGGCCAUGGcGCGCa -3'
miRNA:   3'- cgCGCGgaGCGg-GGCCGGUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 89155 0.77 0.096501
Target:  5'- cCGCGCC-CGCCUCGGgCGaggcGGGCGCg -3'
miRNA:   3'- cGCGCGGaGCGGGGCCgGUa---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 63619 0.77 0.094134
Target:  5'- aGCGCGCgCUCGCCCgaGGCCcaGGGCa- -3'
miRNA:   3'- -CGCGCG-GAGCGGGg-CCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 62066 0.77 0.091594
Target:  5'- cGCGCGCCgucgugacgaacgUCGUCCucggcgcgguCGGCC-UGGGCGCg -3'
miRNA:   3'- -CGCGCGG-------------AGCGGG----------GCCGGuACCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.