miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 81589 0.77 0.087359
Target:  5'- cGCGCGCgUCGCCggGGCCGccGGCGCg -3'
miRNA:   3'- -CGCGCGgAGCGGggCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130270 0.77 0.089565
Target:  5'- gGCGCGCg--GCCCCgaGGCCGcGGGCGCg -3'
miRNA:   3'- -CGCGCGgagCGGGG--CCGGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 63619 0.77 0.094134
Target:  5'- aGCGCGCgCUCGCCCgaGGCCcaGGGCa- -3'
miRNA:   3'- -CGCGCG-GAGCGGGg-CCGGuaCCCGcg -5'
29375 5' -65.6 NC_006151.1 + 38252 0.76 0.101405
Target:  5'- cGCG-GCCcucuUCGCCCCGGCCAacgUGGcCGCg -3'
miRNA:   3'- -CGCgCGG----AGCGGGGCCGGU---ACCcGCG- -5'
29375 5' -65.6 NC_006151.1 + 7649 0.76 0.103944
Target:  5'- cCGCGCCUCGCgCUCGGCgCGcgcuccgaGGGCGCc -3'
miRNA:   3'- cGCGCGGAGCG-GGGCCG-GUa-------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 55453 0.76 0.114709
Target:  5'- gGCGcCGCCg-GCCCC-GCCGggGGGCGCg -3'
miRNA:   3'- -CGC-GCGGagCGGGGcCGGUa-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 39129 0.76 0.114709
Target:  5'- aGgGCGCCcCGCgCCCGGCC-UGGGaccCGCg -3'
miRNA:   3'- -CgCGCGGaGCG-GGGCCGGuACCC---GCG- -5'
29375 5' -65.6 NC_006151.1 + 115131 0.76 0.114709
Target:  5'- cGCGCGCgUgCGCCUCGGCCAgcacGCGCc -3'
miRNA:   3'- -CGCGCGgA-GCGGGGCCGGUacc-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 38038 0.76 0.114709
Target:  5'- cCGCGCCcgcccgCGCCCCGGCCGcccucGGGCccGCc -3'
miRNA:   3'- cGCGCGGa-----GCGGGGCCGGUa----CCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 128194 0.76 0.101405
Target:  5'- aGCGUGCCgcgcuccauggCGCCCCaGGCgugcgacgagcuCGUGGGCGCc -3'
miRNA:   3'- -CGCGCGGa----------GCGGGG-CCG------------GUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 64189 0.75 0.120475
Target:  5'- cGC-CGCCcgcgaUCGCCCCGGgCAgguccggcgUGGGCGCc -3'
miRNA:   3'- -CGcGCGG-----AGCGGGGCCgGU---------ACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 86533 0.75 0.120475
Target:  5'- aCGaCGCCUCGCCCgaGGCCGccGuGGCGCc -3'
miRNA:   3'- cGC-GCGGAGCGGGg-CCGGUa-C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 103136 0.75 0.123458
Target:  5'- cGCGCgGCCaagcgCGCCUCGGCCGacgccgaccUGGcGCGCu -3'
miRNA:   3'- -CGCG-CGGa----GCGGGGCCGGU---------ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 64515 0.75 0.123458
Target:  5'- cGCGCGCCgccaaaggcCGCCgCGGCCGcgucggGGGCGg -3'
miRNA:   3'- -CGCGCGGa--------GCGGgGCCGGUa-----CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 136886 0.75 0.139424
Target:  5'- -aGCGCCUCGCgCCCcacGGC--UGGGUGCg -3'
miRNA:   3'- cgCGCGGAGCG-GGG---CCGguACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 22790 0.75 0.132822
Target:  5'- cGCGCacgugcuggGCCgUCuCCCCGGCCGUcaggugcaggGGGCGCg -3'
miRNA:   3'- -CGCG---------CGG-AGcGGGGCCGGUA----------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 99227 0.75 0.12963
Target:  5'- -aGCGCCUCGCCgCUgcaGGUCGUGGagGCGCu -3'
miRNA:   3'- cgCGCGGAGCGG-GG---CCGGUACC--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 10500 0.75 0.137412
Target:  5'- cGCGCGCCcgccgccgcaggcgCGuCCCCGGCgc-GGGCGCc -3'
miRNA:   3'- -CGCGCGGa-------------GC-GGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 59829 0.75 0.126509
Target:  5'- cGCGaUGUCggcCGCCaCCGGCCGguccgggGGGCGCa -3'
miRNA:   3'- -CGC-GCGGa--GCGG-GGCCGGUa------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 17556 0.75 0.126509
Target:  5'- gGUGCGCCUCGCCCacgaaGGCg--GGGaUGCg -3'
miRNA:   3'- -CGCGCGGAGCGGGg----CCGguaCCC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.