miRNA display CGI


Results 41 - 60 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 103136 0.75 0.123458
Target:  5'- cGCGCgGCCaagcgCGCCUCGGCCGacgccgaccUGGcGCGCu -3'
miRNA:   3'- -CGCG-CGGa----GCGGGGCCGGU---------ACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 123886 0.75 0.136086
Target:  5'- gGCGCucGCCgcgGCCCC-GCCGUGcGGCGCg -3'
miRNA:   3'- -CGCG--CGGag-CGGGGcCGGUAC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 112434 0.75 0.132822
Target:  5'- cCGCGCCgccgcCGCCgCGcGCCAUGGGCu- -3'
miRNA:   3'- cGCGCGGa----GCGGgGC-CGGUACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 86533 0.75 0.120475
Target:  5'- aCGaCGCCUCGCCCgaGGCCGccGuGGCGCc -3'
miRNA:   3'- cGC-GCGGAGCGGGg-CCGGUa-C-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 112190 0.75 0.132822
Target:  5'- uCGCGCCgCGCCCgcaGcGCCuccccGUGGGCGCa -3'
miRNA:   3'- cGCGCGGaGCGGGg--C-CGG-----UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 52261 0.75 0.132822
Target:  5'- uGCGCGuacaCCUCGCUCgUGGUCucgGGGCGCg -3'
miRNA:   3'- -CGCGC----GGAGCGGG-GCCGGua-CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 22790 0.75 0.132822
Target:  5'- cGCGCacgugcuggGCCgUCuCCCCGGCCGUcaggugcaggGGGCGCg -3'
miRNA:   3'- -CGCG---------CGG-AGcGGGGCCGGUA----------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10500 0.75 0.137412
Target:  5'- cGCGCGCCcgccgccgcaggcgCGuCCCCGGCgc-GGGCGCc -3'
miRNA:   3'- -CGCGCGGa-------------GC-GGGGCCGguaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 28112 0.74 0.16107
Target:  5'- gGCGCGgCUCcuCgUCGGCUcgGGGCGCg -3'
miRNA:   3'- -CGCGCgGAGc-GgGGCCGGuaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 70782 0.74 0.142837
Target:  5'- cGCGCGCCUCcgGCaCCGGCguggccguCGUGGGCaGCu -3'
miRNA:   3'- -CGCGCGGAG--CGgGGCCG--------GUACCCG-CG- -5'
29375 5' -65.6 NC_006151.1 + 91094 0.74 0.142837
Target:  5'- aGCGCGaaggUCGUCCCGGCCGc-GGCGCc -3'
miRNA:   3'- -CGCGCgg--AGCGGGGCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 82985 0.74 0.142837
Target:  5'- cGCGCGUCUgCGCCgccaCGGCCGc-GGCGCa -3'
miRNA:   3'- -CGCGCGGA-GCGGg---GCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102407 0.74 0.157263
Target:  5'- gGCGCGCgUCGCgcggCCCgcgaacgaGGCCAUgcaccGGGCGCu -3'
miRNA:   3'- -CGCGCGgAGCG----GGG--------CCGGUA-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 71188 0.74 0.160686
Target:  5'- gGCGCcgucaugGCCUCGCaggagcucgugUCCGuGaCCGUGGGCGCg -3'
miRNA:   3'- -CGCG-------CGGAGCG-----------GGGC-C-GGUACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 84586 0.74 0.157263
Target:  5'- cGCGCGCCUCGCgCUGGCgCAcGcgaacGCGCg -3'
miRNA:   3'- -CGCGCGGAGCGgGGCCG-GUaCc----CGCG- -5'
29375 5' -65.6 NC_006151.1 + 64939 0.74 0.146326
Target:  5'- cGCGCGUCa-GCgCCUGGCCGcgcugcGGGCGCa -3'
miRNA:   3'- -CGCGCGGagCG-GGGCCGGUa-----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 68277 0.74 0.157263
Target:  5'- cGCgGCGCCgggCGCCacggCGGCCA-GGcGCGCg -3'
miRNA:   3'- -CG-CGCGGa--GCGGg---GCCGGUaCC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 114915 0.74 0.142837
Target:  5'- gGCGCacggccccgGCgUCGCgCUCGGCCuccgggGUGGGCGCg -3'
miRNA:   3'- -CGCG---------CGgAGCG-GGGCCGG------UACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 119527 0.74 0.142837
Target:  5'- cCGCGCCUCGCgCCCcGCC-UGcGCGCa -3'
miRNA:   3'- cGCGCGGAGCG-GGGcCGGuACcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 27210 0.74 0.157263
Target:  5'- -gGCGCCgggGCCCCGcgcGCCGUGGacGCGCa -3'
miRNA:   3'- cgCGCGGag-CGGGGC---CGGUACC--CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.