miRNA display CGI


Results 1 - 20 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 124910 0.66 0.503975
Target:  5'- cGCGCGacggcuCCUuccgcuucaCGUCgCgGGCCcUGGGCGCc -3'
miRNA:   3'- -CGCGC------GGA---------GCGG-GgCCGGuACCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2459 0.66 0.503975
Target:  5'- gGgGCGCCgaGCCCCcagcgguuGGCCGcGcGGUGCc -3'
miRNA:   3'- -CgCGCGGagCGGGG--------CCGGUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 58173 0.66 0.503975
Target:  5'- -aGCGCCaccagCGCCgCGuugcucacGCCGUGGGC-Ca -3'
miRNA:   3'- cgCGCGGa----GCGGgGC--------CGGUACCCGcG- -5'
29375 5' -65.6 NC_006151.1 + 74868 0.66 0.503975
Target:  5'- -gGCGCCgCGCaCCgCGGCCAccguggccgGGGCcaGCc -3'
miRNA:   3'- cgCGCGGaGCG-GG-GCCGGUa--------CCCG--CG- -5'
29375 5' -65.6 NC_006151.1 + 140233 0.66 0.503975
Target:  5'- cUGCGCCUgaaGCUCgGGCCGUuccuGCGCu -3'
miRNA:   3'- cGCGCGGAg--CGGGgCCGGUAcc--CGCG- -5'
29375 5' -65.6 NC_006151.1 + 58629 0.66 0.503975
Target:  5'- cGCaGCGgCUCGUagaaGGCCAgcgccgggaGGGCGCg -3'
miRNA:   3'- -CG-CGCgGAGCGggg-CCGGUa--------CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 61217 0.66 0.503975
Target:  5'- aGCaGCGCCgUCGUcuugCCCGaGcCCAUcGGaGCGCg -3'
miRNA:   3'- -CG-CGCGG-AGCG----GGGC-C-GGUA-CC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 106992 0.66 0.503975
Target:  5'- cGCGUGCCUgGCgCCgcagcuggagCGGCUcucGGCGCu -3'
miRNA:   3'- -CGCGCGGAgCG-GG----------GCCGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 103029 0.66 0.494927
Target:  5'- -aGCGCCUCgggGCCugguucgcgcugCUGGCCGa-GGCGCa -3'
miRNA:   3'- cgCGCGGAG---CGG------------GGCCGGUacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 103698 0.66 0.494927
Target:  5'- uGCGCGCCgccguggaGCaCCCGGagcUGGGCu- -3'
miRNA:   3'- -CGCGCGGag------CG-GGGCCgguACCCGcg -5'
29375 5' -65.6 NC_006151.1 + 24284 0.66 0.494927
Target:  5'- gGCGCGUgUCGggcgggaacuCCUCGGggugcaccCCGaGGGCGCg -3'
miRNA:   3'- -CGCGCGgAGC----------GGGGCC--------GGUaCCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 34610 0.66 0.494927
Target:  5'- cGCGCGCCgagCGCga-GGCgCGggugGGGCGa -3'
miRNA:   3'- -CGCGCGGa--GCGgggCCG-GUa---CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 60088 0.66 0.494927
Target:  5'- cGCGCGCCgccgcgaaCGCCgggCGGCagc-GGCGCu -3'
miRNA:   3'- -CGCGCGGa-------GCGGg--GCCGguacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 96015 0.66 0.494927
Target:  5'- gGCGCGCaC-CGCCUCcuCgGUGGuGCGCg -3'
miRNA:   3'- -CGCGCG-GaGCGGGGccGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 97494 0.66 0.494927
Target:  5'- aCGCGCagCGCCUcgCGGCgGU-GGCGCu -3'
miRNA:   3'- cGCGCGgaGCGGG--GCCGgUAcCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102944 0.66 0.494927
Target:  5'- cGCGCGCUggacgcggCGCCCgCcGCCcacgacGGCGCg -3'
miRNA:   3'- -CGCGCGGa-------GCGGG-GcCGGuac---CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 103394 0.66 0.494927
Target:  5'- cGCGCGCUgcugggcgacuUUGCcacgcugggCCCGGCgGUGGaccugcucGCGCa -3'
miRNA:   3'- -CGCGCGG-----------AGCG---------GGGCCGgUACC--------CGCG- -5'
29375 5' -65.6 NC_006151.1 + 113667 0.66 0.494927
Target:  5'- -gGCGCagaUCGCCgCCGagaaccGCUucgagGGGCGCg -3'
miRNA:   3'- cgCGCGg--AGCGG-GGC------CGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130344 0.66 0.494927
Target:  5'- cGCGCGCCgcggCGUCgugguugaCGGCCGcGcGCGCc -3'
miRNA:   3'- -CGCGCGGa---GCGGg-------GCCGGUaCcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 100193 0.66 0.494927
Target:  5'- cGgGCGaCCUgcuggacucgaUGgCCaCGGCCGcGGGCGCc -3'
miRNA:   3'- -CgCGC-GGA-----------GCgGG-GCCGGUaCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.