miRNA display CGI


Results 21 - 40 of 468 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29375 5' -65.6 NC_006151.1 + 103394 0.66 0.494927
Target:  5'- cGCGCGCUgcugggcgacuUUGCcacgcugggCCCGGCgGUGGaccugcucGCGCa -3'
miRNA:   3'- -CGCGCGG-----------AGCG---------GGGCCGgUACC--------CGCG- -5'
29375 5' -65.6 NC_006151.1 + 113667 0.66 0.494927
Target:  5'- -gGCGCagaUCGCCgCCGagaaccGCUucgagGGGCGCg -3'
miRNA:   3'- cgCGCGg--AGCGG-GGC------CGGua---CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 130344 0.66 0.494927
Target:  5'- cGCGCGCCgcggCGUCgugguugaCGGCCGcGcGCGCc -3'
miRNA:   3'- -CGCGCGGa---GCGGg-------GCCGGUaCcCGCG- -5'
29375 5' -65.6 NC_006151.1 + 136673 0.66 0.494927
Target:  5'- cGCGCgGCCgcCGCCUUcuuccGCCAcgugcGGGCGCa -3'
miRNA:   3'- -CGCG-CGGa-GCGGGGc----CGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 71687 0.66 0.494026
Target:  5'- cGCGUGCCgagcgugUCGCCCagccgcgaGGCCGa-GGCGa -3'
miRNA:   3'- -CGCGCGG-------AGCGGGg-------CCGGUacCCGCg -5'
29375 5' -65.6 NC_006151.1 + 139167 0.66 0.494026
Target:  5'- cCGCGCCcucguguggaucuUUGUgCUGGCgGUcgGGGCGCu -3'
miRNA:   3'- cGCGCGG-------------AGCGgGGCCGgUA--CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 102525 0.66 0.485954
Target:  5'- gGCgGCGUCUaCGaCCagaCGGUgGUGGcGCGCg -3'
miRNA:   3'- -CG-CGCGGA-GC-GGg--GCCGgUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 134273 0.66 0.485954
Target:  5'- -gGCGauuguaGCCCCgGGCCGcccacGGGCGCa -3'
miRNA:   3'- cgCGCggag--CGGGG-CCGGUa----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 2165 0.66 0.485954
Target:  5'- cCGU-CCUCGCCggggCCGGCCcc-GGCGCc -3'
miRNA:   3'- cGCGcGGAGCGG----GGCCGGuacCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 10863 0.66 0.485954
Target:  5'- ----cCCUCGCCCCGGCCccccggcuuGGUGCc -3'
miRNA:   3'- cgcgcGGAGCGGGGCCGGuac------CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 17960 0.66 0.485954
Target:  5'- -gGCGCC-CGCCugCCGGCguccCAcGcGGCGCa -3'
miRNA:   3'- cgCGCGGaGCGG--GGCCG----GUaC-CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 20754 0.66 0.485954
Target:  5'- gGCGCGCCUCcaCCgCGGCgGacgcgcgccGGGCGa -3'
miRNA:   3'- -CGCGCGGAGc-GGgGCCGgUa--------CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 37866 0.66 0.485954
Target:  5'- cCGCGCCgCGgacCCCCGcGCCG-GGGagGCg -3'
miRNA:   3'- cGCGCGGaGC---GGGGC-CGGUaCCCg-CG- -5'
29375 5' -65.6 NC_006151.1 + 75132 0.66 0.485954
Target:  5'- gGCG-GCCggCGgCgCGGCCcagcgcGGGCGCa -3'
miRNA:   3'- -CGCgCGGa-GCgGgGCCGGua----CCCGCG- -5'
29375 5' -65.6 NC_006151.1 + 90469 0.66 0.485954
Target:  5'- aGCGCGCagCGCCagcaUGGCUcgccgGGGCGg -3'
miRNA:   3'- -CGCGCGgaGCGGg---GCCGGua---CCCGCg -5'
29375 5' -65.6 NC_006151.1 + 114169 0.66 0.485954
Target:  5'- cGCGCGgcCCUCGUgCUGGCCuac-GUGCa -3'
miRNA:   3'- -CGCGC--GGAGCGgGGCCGGuaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 70896 0.66 0.485954
Target:  5'- cGCGCGCUgcgucgugCGCugCCUGGCgcgCGUGcuGGCGCu -3'
miRNA:   3'- -CGCGCGGa-------GCG--GGGCCG---GUAC--CCGCG- -5'
29375 5' -65.6 NC_006151.1 + 98382 0.66 0.485954
Target:  5'- cGCGCGCUgCG-CCUGGCCugccGCGCc -3'
miRNA:   3'- -CGCGCGGaGCgGGGCCGGuaccCGCG- -5'
29375 5' -65.6 NC_006151.1 + 100584 0.66 0.485954
Target:  5'- gGC-CGCCacCGUCCugCGGcCCGUGGaGCGCu -3'
miRNA:   3'- -CGcGCGGa-GCGGG--GCC-GGUACC-CGCG- -5'
29375 5' -65.6 NC_006151.1 + 66554 0.66 0.485954
Target:  5'- cGCGCGgC-CGCgCC-GCCGUGgacccGGCGCu -3'
miRNA:   3'- -CGCGCgGaGCGgGGcCGGUAC-----CCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.