Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29376 | 3' | -53.4 | NC_006151.1 | + | 713 | 0.67 | 0.945635 |
Target: 5'- cCGUCgcACCgggGGUCCGCgggcGGGGGCu -3' miRNA: 3'- uGCAGa-UGGa--CCGGGUGaaa-CUCUCG- -5' |
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29376 | 3' | -53.4 | NC_006151.1 | + | 111292 | 0.67 | 0.945635 |
Target: 5'- uACG-CgGCCUGGCCCACgaacgcGGCg -3' miRNA: 3'- -UGCaGaUGGACCGGGUGaaacucUCG- -5' |
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29376 | 3' | -53.4 | NC_006151.1 | + | 70910 | 0.67 | 0.945635 |
Target: 5'- uGCG-CUGCCUGGCgCGCg-UGcuGGCg -3' miRNA: 3'- -UGCaGAUGGACCGgGUGaaACucUCG- -5' |
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29376 | 3' | -53.4 | NC_006151.1 | + | 22990 | 0.67 | 0.936102 |
Target: 5'- -gGUCgugAUCUcGGCCgCGCgggUGGGGGCg -3' miRNA: 3'- ugCAGa--UGGA-CCGG-GUGaa-ACUCUCG- -5' |
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29376 | 3' | -53.4 | NC_006151.1 | + | 111463 | 0.68 | 0.915225 |
Target: 5'- uGCGUCUGCgaggcgucgucggGGCCCAUgaagcggaacGAGAGCu -3' miRNA: 3'- -UGCAGAUGga-----------CCGGGUGaaa-------CUCUCG- -5' |
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29376 | 3' | -53.4 | NC_006151.1 | + | 132285 | 0.68 | 0.914626 |
Target: 5'- cACGUCcugggccaccACCUGGUCCGCgugcaggcgccacGAGAGCu -3' miRNA: 3'- -UGCAGa---------UGGACCGGGUGaaa----------CUCUCG- -5' |
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29376 | 3' | -53.4 | NC_006151.1 | + | 119111 | 0.68 | 0.914026 |
Target: 5'- uACGUgaGCCgcgcGGCCgGCcucgUGGGGGCg -3' miRNA: 3'- -UGCAgaUGGa---CCGGgUGaa--ACUCUCG- -5' |
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29376 | 3' | -53.4 | NC_006151.1 | + | 136559 | 1.11 | 0.003169 |
Target: 5'- uACGUCUACCUGGCCCACUUUGAGAGCu -3' miRNA: 3'- -UGCAGAUGGACCGGGUGAAACUCUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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